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SCNpilot_cont_300_bf_scaffold_84_curated_89

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 87943..89106

Top 3 Functional Annotations

Value Algorithm Source
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J2KVX1_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 96.1
  • Coverage: 387.0
  • Bit_score: 735
  • Evalue 2.10e-209
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17808.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.4
  • Coverage: 387.0
  • Bit_score: 739
  • Evalue 2.70e-210
extracellular ligand-binding receptor similarity KEGG
DB: KEGG
  • Identity: 95.3
  • Coverage: 387.0
  • Bit_score: 730
  • Evalue 3.70e-208

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1164
ATGAAGAGCCTGATGCAGACCTTGACGCGCGGCACACTCGCCGCGGTGCTGACCGCCTGTGGCGTTGCGAGCGCGTTGGCGGCCGACCTCAAGGTCGGCCTCAGCGTGTCGCTGTCGGGGCCGAATTCCTCGCTGGGCGTGCCCTACGCCAAGGGCATGCAGGCCGCACTGGCCTACAAGGGTGAGGTGAACGGCCGCAAGGTGCAGCTCATCGTGCTCGACGACGGCTCCGACCCCACCACGGCCGGGCGCAATGCGCGCAAGCTGATCGAGGACGAGAAGGTGGATGTGCTCATGGGCACCTCGGGCGTGCCCGCGGCCATCGCGATGGCGCAGGTCGGCAAGGAAGCGAAGACGCCGATGATCGGCCTCACGCCCATCCTGCTCGACCCCAACGAGAACCCGTGGGTGATGACGGTGGCGCAGCCCACGCAGTTGATGATCGACGCGGTGGTCGAGCGCATGAAGCGCAACAACGTGAAGACCGTGGGCTACATCGGCTTCTCCGACGCCTGGGGCGACCTGGTCTATGACGCGCTCATGAAGGCCGCGCCCGGCGCCGGCATCAAGGTGGTGAGCAACGAGCGCTATGCGCGCGCCGACGCCTCGGTGACCGGCCAGGTGCTGAAGATCGTGGCGCTGCGGCCCGACGCGGTGATGACCGGCGGCGCCGGAACGCCGGGCGCGCTGCCGTTCCTGGCCCTGCAGGAGCGCGGCTACAAGGGCGGCGTGTACGGCCAGCATGGCCTGATCAACCCCGACTTCGTGCGCGTGGTCGGCGCGGCCGGCCAGAACGCGCTGATGCCCACAGGCCCGGTGATCGTGGCCGAGCAGTTGCCCGACAACTATCCGACCAAGAAGATCGCGACCGACTTCCGCGCCGTGTTCCAGAAGGTCAACAACGCGCCGACCAGCGATGCCTTCTCGGCCTACTCTTTTGACGGCTGGCTGGTGTTCGCCGACGCCGCATCGCGCGCCATGAAGAAGGCCGAGCCCGGCACGCCCGAGTTCCGCGTGGCGCTGCGCGACGCCATCTTCAGCACCAAGGAAGTGGTGGGCACGCACGGTGTCTACACCTTCAAACCCGGTAGCCTTTACGGCGTGGATGAACGCGCCCGGGTGATCGTCAAGCTCGACAACGGCCAATGGAAGCTCGCACCTTGA
PROTEIN sequence
Length: 388
MKSLMQTLTRGTLAAVLTACGVASALAADLKVGLSVSLSGPNSSLGVPYAKGMQAALAYKGEVNGRKVQLIVLDDGSDPTTAGRNARKLIEDEKVDVLMGTSGVPAAIAMAQVGKEAKTPMIGLTPILLDPNENPWVMTVAQPTQLMIDAVVERMKRNNVKTVGYIGFSDAWGDLVYDALMKAAPGAGIKVVSNERYARADASVTGQVLKIVALRPDAVMTGGAGTPGALPFLALQERGYKGGVYGQHGLINPDFVRVVGAAGQNALMPTGPVIVAEQLPDNYPTKKIATDFRAVFQKVNNAPTSDAFSAYSFDGWLVFADAASRAMKKAEPGTPEFRVALRDAIFSTKEVVGTHGVYTFKPGSLYGVDERARVIVKLDNGQWKLAP*