ggKbase home page

SCNpilot_cont_500_bf_scaffold_48362_1

Organism: SCNPILOT_CONT_300_BF_Pseudonocardia_72_23

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: 3..941

Top 3 Functional Annotations

Value Algorithm Source
Type IV secretory pathway VirD4 protein-like protein n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFDCC9 similarity UNIREF
DB: UNIREF100
  • Identity: 58.0
  • Coverage: 326.0
  • Bit_score: 319
  • Evalue 3.00e-84
type IV secretory pathway VirD4 protein-like protein similarity KEGG
DB: KEGG
  • Identity: 53.8
  • Coverage: 314.0
  • Bit_score: 282
  • Evalue 1.30e-73
Type IV secretory pathway VirD4 protein-like protein {ECO:0000313|EMBL:AEA26542.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.8
  • Coverage: 314.0
  • Bit_score: 282
  • Evalue 5.60e-73

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pseudonocardia dioxanivorans → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 939
ATGCCCGCGCTCGGCTGGCTGATGCACGAGGCCGCGGCGCAGGCCGCGACCGGGCCGCGCACCGGAGGCGCCGGGTTCGACGTCGCCGATCTGCTCGACGCCCGCGCGACCGTCTACCTGCTCGGCGCGGAGGAGACCCAGACCGCGCCCCTGGTCTCGGCACTGACCGGGCACATCGCCCGCGAGGCCCGCCGCGTCGCCGCACTCCGGCCGGGCGGCCGGCTCGACCCGCCGCTCACGCTCGCGCTCGACGAGGCCGCGCTGATCTGCCCCGTCCCTTTGCACCAGTGGACGGCGGACATGGGCGGGCGCGGTGTGACGATCATCGGCGCGTTCCAGTCCCGGGCGCAGGTGCTCGACCGCTACGGCCCGGCCAAGGCCGAGATCATCCTCAACAACTCCGCGGGCGTCCTGGTGTTCGGCGGGACCCGCTCCCGCGACGATCTGGAGTACTGGTCGACGCTGGGCGGCGAGCGGGACGAGCCGATCACGACGACCGACCTGCACGGCCGCGTCGCCTCCCGCACCACCCGCCGCGTCCCGGTGCTGGCGCCCGCGCAGATCGCCAACCTGCCCGCCGAGACCGTCGTGGCGTTCAGGCGCGGGATGCCGCCGGTGATCGGCAAGGTCCAGATGGCCTACCGGCGCCCGGACGTCCGCGCGCACTTCGTGCCCGAGGCCCTCGACGTCCGGCTGCGCGCCCGCCGGGATGCCGGGCGGGCGTGGCTTGTCCGCCGCGTCGCCGATCCGATCGGTGCAGCCGTCGCGTGGGTGCTGGCGTGGGTGGCCCAGTTCGGCCGGCGGCTGTGGGCCGGGTGCGAGCCGGTGCGGGCGCGGTTCCGTCGCCGCAAGGTCGTGGTCCCCGTCCTCCGGGTCGTGCCGGACCTGCCGCCCACACCCCCGGAGGTCGACGGCGACGAGCGGCGGCGGCAGCGATGA
PROTEIN sequence
Length: 313
MPALGWLMHEAAAQAATGPRTGGAGFDVADLLDARATVYLLGAEETQTAPLVSALTGHIAREARRVAALRPGGRLDPPLTLALDEAALICPVPLHQWTADMGGRGVTIIGAFQSRAQVLDRYGPAKAEIILNNSAGVLVFGGTRSRDDLEYWSTLGGERDEPITTTDLHGRVASRTTRRVPVLAPAQIANLPAETVVAFRRGMPPVIGKVQMAYRRPDVRAHFVPEALDVRLRARRDAGRAWLVRRVADPIGAAVAWVLAWVAQFGRRLWAGCEPVRARFRRRKVVVPVLRVVPDLPPTPPEVDGDERRRQR*