ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 54.42 Longest contig: 137.21 Kbp Bin length: 2.25 Mbp GC content: 69.37 %

Contigs count: 654 Features count: 2735 rRNAs count: 0 tRNAs count: 11

Genome completeness

near complete RP 42 / 55 BSCG 42 / 51 ASCG 7 / 38 MC: 1

Displaying items 451-500 of 654 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_cont_500_bf_scaffold_74383 Species: Microbacterium mangrovi (100%)	2	1603 bp	69.87	41.95	73.18
SCNpilot_cont_500_bf_scaffold_58069 Species: Microbacterium laevaniformans (50%)	2	1155 bp	73.51	82.25	96.88
SCNpilot_cont_500_bf_scaffold_42667 Species: Microbacterium laevaniformans (50%)	2	2323 bp	64.14	48.54	80.71
SCNpilot_cont_500_bf_scaffold_62360 Species: Microbacterium sp. MRS-1 (50%)	2	1573 bp	74.63	61.67	63.32
SCNpilot_cont_500_bf_scaffold_63400 Species: Microbacterium testaceum (50%)	2	1064 bp	71.33	58.04	97.84
SCNpilot_cont_500_bf_scaffold_38759 Species: Microbacterium sp. SUBG005 (50%)	2	1604 bp	71.45	58.92	100.62
SCNpilot_cont_500_bf_scaffold_74526 Species: Microbacterium mangrovi (50%)	2	1773 bp	73.10	73.04	96.62
SCNpilot_cont_500_bf_scaffold_24792 Species: Microbacterium mangrovi (50%)	2	2278 bp	69.18	59.92	97.32
SCNpilot_cont_500_bf_scaffold_59717 Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)	2	1126 bp	70.78	52.62	103.11
SCNpilot_cont_500_bf_scaffold_54805 Species: Microbacterium sp. SA39 (50%)	2	2309 bp	69.34	55.65	92.51
SCNpilot_cont_500_bf_scaffold_99582 Species: Microbacterium laevaniformans (50%)	2	1127 bp	75.69	58.56	79.06
SCNpilot_cont_500_bf_scaffold_66514 Species: Microbacterium mangrovi (50%)	2	1641 bp	71.85	69.01	93.97
SCNpilot_cont_500_bf_scaffold_63666 Species: Microbacterium mangrovi (100%)	2	1817 bp	66.48	62.05	78.92
SCNpilot_cont_500_bf_scaffold_74590 Species: Microbacterium ginsengisoli (50%)	2	1947 bp	66.97	48.41	86.13
SCNpilot_cont_500_bf_scaffold_84628 Species: Agrococcus pavilionensis (50%)	2	1711 bp	64.76	48.80	38.05
SCNpilot_cont_500_bf_scaffold_58852 Species: Microbacterium mangrovi (50%)	2	1141 bp	68.27	67.05	84.93
SCNpilot_cont_500_bf_scaffold_62118 Species: Microbacterium mangrovi (50%)	2	1711 bp	70.31	50.70	98.19
SCNpilot_cont_500_bf_scaffold_32562 Species: Microbacterium testaceum (50%)	2	1844 bp	75.76	65.89	100.22
SCNpilot_cont_500_bf_scaffold_59473 Species: Microbacterium testaceum (50%)	2	1130 bp	67.43	54.87	96.90
SCNpilot_cont_500_bf_scaffold_61426 Species: Xylanimonas cellulosilytica (50%)	2	1097 bp	69.46	67.46	95.44
SCNpilot_cont_500_bf_scaffold_90896 Species: Microbacterium mangrovi (50%)	2	1190 bp	74.45	49.37	66.55
SCNpilot_cont_500_bf_scaffold_71289 Species: Microbacterium sp. MRS-1 (50%)	2	1764 bp	66.44	48.33	79.76
SCNpilot_cont_500_bf_scaffold_43752 Species: Microbacterium testaceum (50%)	2	1457 bp	70.21	57.82	96.16
SCNpilot_cont_500_bf_scaffold_86274 Species: Microbacterium oxydans (50%)	2	1230 bp	69.59	56.71	100.00
SCNpilot_cont_500_bf_scaffold_28889 Species: marine actinobacterium PHSC20C1 (50%)	2	2026 bp	70.58	62.93	98.91
SCNpilot_cont_500_bf_scaffold_46815 Species: Microbacterium testaceum (50%)	2	1378 bp	68.80	52.79	92.96
SCNpilot_cont_500_bf_scaffold_59738 Species: Microbacterium laevaniformans (50%)	2	1125 bp	71.02	44.44	98.13
SCNpilot_cont_500_bf_scaffold_57762 Species: Microbacterium sp. C448 (50%)	2	1160 bp	68.88	66.16	97.24
SCNpilot_cont_500_bf_scaffold_91096 Species: Microbacterium sp. C448 (50%)	2	1321 bp	72.75	65.48	62.91
SCNpilot_cont_500_bf_scaffold_52010 Species: Microbacterium sp. C448 (50%)	2	1265 bp	72.65	70.75	102.45
SCNpilot_cont_500_bf_scaffold_77636 Species: Microbacterium laevaniformans (50%)	2	1354 bp	74.52	67.39	74.67
SCNpilot_cont_500_bf_scaffold_38272 Species: Microbacterium sp. MRS-1 (50%)	2	3206 bp	67.50	61.06	88.62
SCNpilot_cont_500_bf_scaffold_60290 Species: Microbacterium sp. oral taxon 186 (50%)	2	1117 bp	70.46	52.37	95.61
SCNpilot_cont_500_bf_scaffold_37803 Species: Microbacterium mangrovi (100%)	2	6309 bp	73.18	59.24	100.05
SCNpilot_cont_500_bf_scaffold_58615 Species: Microbacterium mangrovi (50%)	2	1839 bp	71.67	43.64	73.25
SCNpilot_cont_500_bf_scaffold_56160 Species: Microbacterium azadirachtae (50%)	2	1740 bp	73.10	67.10	87.24
SCNpilot_cont_500_bf_scaffold_40309 Species: Microbacterium sp. TS-1 (50%)	2	1556 bp	69.73	64.59	89.07
SCNpilot_cont_500_bf_scaffold_52017 Species: Agreia bicolorata (50%)	2	1265 bp	66.32	81.03	82.53
SCNpilot_cont_500_bf_scaffold_63690 Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (100%)	2	1059 bp	73.94	71.53	92.92
SCNpilot_cont_500_bf_scaffold_51458 Species: Microbacterium sp. C448 (50%)	2	1833 bp	70.98	59.87	93.29
SCNpilot_cont_500_bf_scaffold_67115 Species: Microbacterium laevaniformans (100%)	2	1635 bp	67.58	50.76	66.79
SCNpilot_cont_500_bf_scaffold_61699 Species: Leifsonia aquatica (50%)	2	1092 bp	68.96	54.95	98.08
SCNpilot_cont_500_bf_scaffold_85029 Species: Arthrobacter sp. MWB30 (50%)	2	1624 bp	62.75	46.95	65.76
SCNpilot_cont_500_bf_scaffold_58620 Species: Microbacterium sp. MRS-1 (50%)	2	1145 bp	75.28	54.59	92.23
SCNpilot_cont_500_bf_scaffold_50132 Species: Microbacterium ginsengisoli (50%)	2	2236 bp	65.07	57.69	93.92
SCNpilot_cont_500_bf_scaffold_40057 Species: Microbacterium oleivorans (50%)	2	1564 bp	71.42	65.22	93.61
SCNpilot_cont_500_bf_scaffold_48526 Species: Microbacterium laevaniformans (50%)	2	1336 bp	70.88	59.32	94.31
SCNpilot_cont_500_bf_scaffold_56683 Species: Microbacterium oleivorans (50%)	2	1178 bp	70.71	55.60	105.43
SCNpilot_cont_500_bf_scaffold_40831 Species: Microbacterium mangrovi (100%)	2	1540 bp	69.48	50.49	92.53
SCNpilot_cont_500_bf_scaffold_56684 Species: Microbacterium testaceum (50%)	2	1178 bp	72.41	77.89	72.84

Displaying items 451-500 of 654 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNPILOT_CONT_300_BF_Microbacterium_70_39_partial) and add all its contigs / scaffolds to the organism you choose below

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Other organism

SCNPILOT_CONT_300_BF_Microbacterium_70_39_partial

SCNPILOT_CONT_500_BF_Microbacterium_69_54

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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