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SCNPILOT_CONT_300_BF_Microbacterium_70_39_partial

SCNPILOT_CONT_500_BF_Microbacterium_69_54
In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy: Microbacterium  →  Actinomycetales  →  Actinobacteridae  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 54.42 Longest contig: 137.21 Kbp Bin length: 2.25 Mbp GC content: 69.37 %
Contigs count: 654 Features count: 2735 rRNAs count: 0 tRNAs count: 11

Genome completeness

near complete RP 42 / 55 BSCG 42 / 51 ASCG 7 / 38 MC: 1
Displaying items 1-50 of 654 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_89645
Species: Microbacterium testaceum (50%)
2 1214 bp 70.43 55.81 107.99
SCNpilot_cont_500_bf_scaffold_56683
Species: Microbacterium oleivorans (50%)
2 1178 bp 70.71 55.60 105.43
SCNpilot_cont_500_bf_scaffold_49976
Genus: Microbacterium (66.67%)
3 1306 bp 66.69 37.71 104.52
SCNpilot_cont_500_bf_scaffold_88108
Species: Microbacterium sp. TS-1 (50%)
2 1295 bp 69.34 59.85 104.25
SCNpilot_cont_500_bf_scaffold_81667
Species: Microbacterium sp. SA39 (50%)
2 1223 bp 68.60 60.51 103.52
SCNpilot_cont_500_bf_scaffold_74077
Species: Microbacterium hominis (50%)
2 1522 bp 74.31 60.78 103.29
SCNpilot_cont_500_bf_scaffold_59717
Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)
2 1126 bp 70.78 52.62 103.11
SCNpilot_cont_500_bf_scaffold_40016
Species: Microbacterium oxydans (50%)
2 1565 bp 69.58 39.94 102.56
SCNpilot_cont_500_bf_scaffold_50789
Order: Micrococcales (75%)
4 1958 bp 69.92 47.24 102.50
SCNpilot_cont_500_bf_scaffold_52010
Species: Microbacterium sp. C448 (50%)
2 1265 bp 72.65 70.75 102.45
SCNpilot_cont_500_bf_scaffold_62926
Species: Microbacterium mangrovi (66.67%)
3 2552 bp 72.92 56.03 102.27
SCNpilot_cont_500_bf_scaffold_94738
Genus: Microbacterium (75%)
4 1312 bp 68.45 55.45 101.98
SCNpilot_cont_500_bf_scaffold_50425
Species: Microbacterium oleivorans (50%)
2 1297 bp 69.78 61.87 101.77
SCNpilot_cont_500_bf_scaffold_42054
Species: Microbacterium azadirachtae (66.67%)
3 2108 bp 74.72 64.87 101.61
SCNpilot_cont_500_bf_scaffold_47267
Species: Microbacterium mangrovi (50%)
2 1367 bp 71.32 53.95 101.61
SCNpilot_cont_500_bf_scaffold_55898
Genus: Microbacterium (100%)
3 1193 bp 70.24 45.26 101.09
SCNpilot_cont_500_bf_scaffold_54535
Species: Microbacterium sp. oral taxon 186 (50%)
2 1219 bp 72.85 55.58 100.90
SCNpilot_cont_500_bf_scaffold_30950
Genus: Microbacterium (100%)
3 1916 bp 66.39 48.67 100.68
SCNpilot_cont_500_bf_scaffold_44585
Species: Microbacterium mangrovi (66.67%)
3 1434 bp 75.24 72.52 100.63
SCNpilot_cont_500_bf_scaffold_38759
Species: Microbacterium sp. SUBG005 (50%)
2 1604 bp 71.45 58.92 100.62
SCNpilot_cont_500_bf_scaffold_53520
Species: Leifsonia aquatica (50%)
2 1238 bp 73.91 48.87 100.57
SCNpilot_cont_500_bf_scaffold_25184
Genus: Microbacterium (100%)
3 2250 bp 74.89 61.11 100.53
SCNpilot_cont_500_bf_scaffold_92202
Species: Microbacterium ginsengisoli (50%)
2 1137 bp 72.21 60.47 100.53
SCNpilot_cont_500_bf_scaffold_37280
Genus: Microbacterium (75%)
4 2704 bp 71.56 58.06 100.52
SCNpilot_cont_500_bf_scaffold_39576
Species: marine actinobacterium PHSC20C1 (50%)
2 1579 bp 66.62 53.67 100.51
SCNpilot_cont_500_bf_scaffold_71475
Species: Microbacterium ginsengisoli (50%)
4 1542 bp 69.20 37.45 100.39
SCNpilot_cont_500_bf_scaffold_47338
Genus: Microbacterium (80%)
5 2953 bp 70.34 55.88 100.37
SCNpilot_cont_500_bf_scaffold_50770
Species: Microbacterium mangrovi (100%)
2 2433 bp 67.00 59.19 100.37
SCNpilot_cont_500_bf_scaffold_48334
Species: Microbacterium azadirachtae (50%)
4 2445 bp 73.58 68.20 100.37
SCNpilot_cont_500_bf_scaffold_46594
Genus: Microbacterium (100%)
3 1384 bp 72.40 78.03 100.36
SCNpilot_cont_500_bf_scaffold_73007
Species: Microbacterium mangrovi (50%)
2 1439 bp 71.02 56.29 100.28
SCNpilot_cont_500_bf_scaffold_62252
Species: Microbacterium sp. C448 (50%)
2 1083 bp 74.15 54.71 100.28
SCNpilot_cont_500_bf_scaffold_55866
Species: Agreia bicolorata (50%)
2 1194 bp 70.44 60.93 100.25
SCNpilot_cont_500_bf_scaffold_32562
Species: Microbacterium testaceum (50%)
2 1844 bp 75.76 65.89 100.22
SCNpilot_cont_500_bf_scaffold_63611
Species: Microbacterium ginsengisoli (50%)
2 1060 bp 70.19 63.68 100.19
SCNpilot_cont_500_bf_scaffold_51936
Species: Microbacterium mangrovi (50%)
4 2198 bp 68.02 50.96 100.18
SCNpilot_cont_500_bf_scaffold_35877
Species: Microbacterium laevaniformans (50%)
2 1707 bp 75.45 78.79 100.18
SCNpilot_cont_500_bf_scaffold_29479
Genus: Microbacterium (50%)
4 2947 bp 69.22 45.98 100.17
SCNpilot_cont_500_bf_scaffold_22389
Species: Microbacterium mangrovi (50%)
2 2462 bp 68.20 61.23 100.16
SCNpilot_cont_500_bf_scaffold_86809
Species: Microbacterium hominis (50%)
2 1300 bp 68.08 50.19 100.15
SCNpilot_cont_500_bf_scaffold_83210
Species: Microbacterium oleivorans (50%)
2 1369 bp 73.27 59.72 100.15
SCNpilot_cont_500_bf_scaffold_60236
Species: Microbacterium mangrovi (50%)
2 1600 bp 74.81 62.03 100.13
SCNpilot_cont_500_bf_scaffold_62720
Species: Microbacterium azadirachtae (100%)
2 1804 bp 68.90 60.01 100.11
SCNpilot_cont_500_bf_scaffold_66819
Species: Microbacterium sp. TS-1 (50%)
2 1010 bp 71.49 64.11 100.10
SCNpilot_cont_500_bf_scaffold_62331
Species: Microbacterium mangrovi (50%)
2 1082 bp 69.04 49.21 100.09
SCNpilot_cont_500_bf_scaffold_54159
Species: Microbacterium mangrovi (100%)
2 1226 bp 69.98 35.48 100.08
SCNpilot_cont_500_bf_scaffold_48373
Species: Microbacterium mangrovi (50%)
2 1340 bp 70.30 43.66 100.08
SCNpilot_cont_500_bf_scaffold_42615
Species: Beutenbergia cavernae (100%)
2 1487 bp 71.69 58.00 100.07
SCNpilot_cont_500_bf_scaffold_88561
Species: Microbacterium ginsengisoli (50%)
2 1643 bp 66.77 43.52 100.06
SCNpilot_cont_500_bf_scaffold_36980
Genus: Microbacterium (100%)
3 1667 bp 68.87 61.64 100.06
Displaying items 1-50 of 654 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.