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SCNPILOT_CONT_300_BF_Rhizobiales_62_8

SCNPILOT_CONT_500_BF_Alphaproteobacteria_61_35
In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 35.21 Longest contig: 78.11 Kbp Bin length: 1.72 Mbp GC content: 61.03 %
Contigs count: 368 Features count: 2052 rRNAs count: 0 tRNAs count: 18

Genome completeness

partial RP 33 / 55 MC: 1 BSCG 33 / 51 MC: 3 ASCG 8 / 38
Displaying items 201-250 of 368 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_19648
Order: Rhizobiales (60%)
5 2711 bp 62.45 44.08 93.62
SCNpilot_cont_500_bf_scaffold_20709
Class: Alphaproteobacteria (60%)
5 4505 bp 61.13 40.73 89.23
SCNpilot_cont_500_bf_scaffold_18989
Order: Sphingomonadales (60%)
5 5181 bp 62.38 35.66 89.81
SCNpilot_cont_500_bf_scaffold_8160
Class: Alphaproteobacteria (100%)
5 5174 bp 61.98 34.40 96.25
SCNpilot_cont_500_bf_scaffold_8930
Class: Alphaproteobacteria (60%)
5 6246 bp 60.74 40.15 71.33
SCNpilot_cont_500_bf_scaffold_38219
Order: Rhizobiales (80%)
5 2213 bp 62.95 34.00 94.89
SCNpilot_cont_500_bf_scaffold_31168
Class: Alphaproteobacteria (60%)
5 2402 bp 60.91 42.26 75.31
SCNpilot_cont_500_bf_scaffold_12211
Class: Alphaproteobacteria (80%)
5 3849 bp 61.42 38.84 86.28
SCNpilot_cont_500_bf_scaffold_11960
Order: Caulobacterales (60%)
5 3901 bp 62.09 34.86 91.13
SCNpilot_cont_500_bf_scaffold_48736
Order: Rhodobacterales (60%)
5 3084 bp 59.11 33.24 91.73
SCNpilot_cont_500_bf_scaffold_9909
Order: Rhizobiales (80%)
5 4484 bp 60.21 40.20 92.33
SCNpilot_cont_500_bf_scaffold_34122
Class: Alphaproteobacteria (80%)
5 4541 bp 59.50 33.69 58.47
SCNpilot_cont_500_bf_scaffold_66282 5 2085 bp 60.29 41.49 64.46
SCNpilot_cont_500_bf_scaffold_17374
Class: Alphaproteobacteria (80%)
5 3755 bp 63.41 36.48 93.79
SCNpilot_cont_500_bf_scaffold_44549
Domain: Bacteria (60%)
5 2505 bp 63.51 20.46 99.40
SCNpilot_cont_500_bf_scaffold_19500
Class: Alphaproteobacteria (80%)
5 6505 bp 59.95 37.86 76.83
SCNpilot_cont_500_bf_scaffold_36382
Class: Alphaproteobacteria (60%)
5 2324 bp 61.19 42.06 93.20
SCNpilot_cont_500_bf_scaffold_22348
Phylum: Proteobacteria (100%)
5 3373 bp 63.92 38.69 91.79
SCNpilot_cont_500_bf_scaffold_35038
Domain: Bacteria (60%)
5 2746 bp 56.63 26.31 89.15
SCNpilot_cont_500_bf_scaffold_11560
Class: Alphaproteobacteria (80%)
5 5543 bp 62.15 40.50 92.39
SCNpilot_cont_500_bf_scaffold_7513
Phylum: Proteobacteria (100%)
5 6290 bp 57.92 33.70 97.30
SCNpilot_cont_500_bf_scaffold_28473
Species: alpha proteobacterium MA2 (60%)
5 3224 bp 60.86 38.15 87.00
SCNpilot_cont_500_bf_scaffold_18656 5 2819 bp 60.16 38.05 83.65
SCNpilot_cont_500_bf_scaffold_11629
Order: Rhizobiales (50%)
6 6401 bp 63.91 41.40 98.23
SCNpilot_cont_500_bf_scaffold_18942
Order: Rhizobiales (50%)
6 5604 bp 60.87 31.90 93.15
SCNpilot_cont_500_bf_scaffold_7577
Class: Alphaproteobacteria (83.33%)
6 5478 bp 59.36 37.47 92.94
SCNpilot_cont_500_bf_scaffold_14282
Species: alpha proteobacterium MA2 (50%)
6 3428 bp 62.43 41.50 93.99
SCNpilot_cont_500_bf_scaffold_14546
Order: Caulobacterales (50%)
6 6591 bp 60.73 36.30 85.07
SCNpilot_cont_500_bf_scaffold_21024
Class: Alphaproteobacteria (66.67%)
6 4234 bp 58.48 28.28 77.87
SCNpilot_cont_500_bf_scaffold_21283
Class: Alphaproteobacteria (83.33%)
6 5071 bp 61.86 36.58 96.43
SCNpilot_cont_500_bf_scaffold_39098
Class: Alphaproteobacteria (50%)
6 6538 bp 55.75 34.61 70.62
SCNpilot_cont_500_bf_scaffold_18480
Class: Alphaproteobacteria (66.67%)
6 3653 bp 59.10 35.18 98.88
SCNpilot_cont_500_bf_scaffold_5553
Order: Rhizobiales (50%)
6 6997 bp 61.45 35.91 93.34
SCNpilot_cont_500_bf_scaffold_22502
Class: Alphaproteobacteria (83.33%)
6 3732 bp 60.45 40.06 71.46
SCNpilot_cont_500_bf_scaffold_28089
Class: Alphaproteobacteria (66.67%)
6 2557 bp 65.00 33.14 95.97
SCNpilot_cont_500_bf_scaffold_12218
Phylum: Proteobacteria (50%)
6 3847 bp 63.22 37.11 91.94
SCNpilot_cont_500_bf_scaffold_10876
Class: Alphaproteobacteria (83.33%)
6 5920 bp 63.78 42.10 97.85
SCNpilot_cont_500_bf_scaffold_11989
Order: Rhizobiales (50%)
6 3895 bp 63.67 43.26 94.27
SCNpilot_cont_500_bf_scaffold_10390
Class: Alphaproteobacteria (83.33%)
6 7759 bp 61.22 37.73 86.26
SCNpilot_cont_500_bf_scaffold_4835
Class: Alphaproteobacteria (83.33%)
6 7876 bp 60.03 36.22 93.17
SCNpilot_cont_500_bf_scaffold_7431
Class: Alphaproteobacteria (50%)
6 5556 bp 63.03 37.03 94.87
SCNpilot_cont_500_bf_scaffold_16578
Class: Alphaproteobacteria (83.33%)
6 5745 bp 61.43 40.12 90.44
SCNpilot_cont_500_bf_scaffold_14915
Class: Alphaproteobacteria (66.67%)
6 6023 bp 61.20 43.71 89.66
SCNpilot_cont_500_bf_scaffold_9207
Class: Alphaproteobacteria (50%)
6 7694 bp 60.80 33.99 89.06
SCNpilot_cont_500_bf_scaffold_6298
Order: Caulobacterales (50%)
6 6326 bp 63.23 36.95 94.61
SCNpilot_cont_500_bf_scaffold_5905
Order: Rhizobiales (50%)
6 6668 bp 61.70 40.08 91.96
SCNpilot_cont_500_bf_scaffold_9744
Class: Alphaproteobacteria (83.33%)
6 5274 bp 62.06 38.96 94.77
SCNpilot_cont_500_bf_scaffold_8288
Order: Rhizobiales (50%)
6 5103 bp 61.55 34.29 94.83
SCNpilot_cont_500_bf_scaffold_6361
Order: Rhizobiales (50%)
6 7234 bp 58.85 32.55 90.41
SCNpilot_cont_500_bf_scaffold_12365
Class: Alphaproteobacteria (66.67%)
6 5097 bp 63.98 37.03 100.06
Displaying items 201-250 of 368 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.