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SCNpilot_cont_500_bf_scaffold_7120_6

Organism: SCNPILOT_EXPT_300_BF_Stenotrophomonas_69_97

partial RP 32 / 55 MC: 2 BSCG 34 / 51 MC: 5 ASCG 10 / 38 MC: 1
Location: comp(3769..4317)

Top 3 Functional Annotations

Value Algorithm Source
Putative sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G616_9DELT similarity UNIREF
DB: UNIREF100
  • Identity: 46.2
  • Coverage: 160.0
  • Bit_score: 128
  • Evalue 5.70e-27
Uncharacterized protein {ECO:0000313|EMBL:KGM53642.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.7
  • Coverage: 172.0
  • Bit_score: 178
  • Evalue 1.10e-41
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 47.4
  • Coverage: 175.0
  • Bit_score: 128
  • Evalue 3.00e-27

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Taxonomy

Lysobacter daejeonensis → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 549
ATGAAGGCCGCGACCCTCCCGTTGGACATCGCCCGGCACGTACAGGAAGCCCGCCGCGGGTCGCAGGCGGCGTTCGCCTGGCTTTACCGCACCTTCGCCCCGCTGGTGCATGCCATCCACCTGGGCATGGCACCGCGCGCGCGGGCGGAGGAGCTGACCCAGGAAACCTTCGTCATCGCCTTCGGCAGGCTGGAGCAGTTGCGCGAGCCGGCGCGCTTCGGTCCCTGGATCGCGATGATCGCGCGCCGCAACCGGCCCCCAACCGCCCTCGACGAACATGCGCTGGCCGACGCCGACGAACCGGTCTGGCCTGGGGCGGGCCCGGACGCGATGGCGCAGGCCGGCCAGGCACTGCACGCGATCCGCACCCTGCCCGAGGCCTACCGCGAGACCCTGATCCTGCGCCTGGTCGAAGGCCTCAGCGGACCGGAGATCGCCAGCCTCACCGGACTGACCCCGCAATCGGTCCGGGTGAACCTTCACCGCGGCATGCAGCGGCTGCGCGATGCGCTGGGCATCGCCCGGCAGGAGCAAACAAGCGATGGTTGA
PROTEIN sequence
Length: 183
MKAATLPLDIARHVQEARRGSQAAFAWLYRTFAPLVHAIHLGMAPRARAEELTQETFVIAFGRLEQLREPARFGPWIAMIARRNRPPTALDEHALADADEPVWPGAGPDAMAQAGQALHAIRTLPEAYRETLILRLVEGLSGPEIASLTGLTPQSVRVNLHRGMQRLRDALGIARQEQTSDG*