ggKbase | organisms

Consensus taxonomy: Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 6.69 Longest contig: 32.04 Kbp Bin length: 3.26 Mbp GC content: 69.48 %

Contigs count: 552 Features count: 3520 rRNAs count: 0 tRNAs count: 38

Genome completeness

partial RP 32 / 55 MC: 2 BSCG 34 / 51 MC: 5 ASCG 10 / 38 MC: 1

Displaying items 451-500 of 552 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_cont_500_bf_scaffold_39310 Species: Stenotrophomonas rhizophila (50%)	2	1587 bp	69.44	5.83	94.14
SCNpilot_cont_500_bf_scaffold_65386 Species: Xanthomonas axonopodis (50%)	2	1031 bp	66.63	2.91	100.10
SCNpilot_cont_500_bf_scaffold_31112 Species: Stenotrophomonas rhizophila (50%)	2	1909 bp	71.29	7.60	100.11
SCNpilot_cont_500_bf_scaffold_9847 Species: Sorangium cellulosum (100%)	2	4505 bp	62.40	4.66	95.03
SCNpilot_cont_500_bf_scaffold_55492 Species: Stenotrophomonas rhizophila (100%)	2	1201 bp	71.86	6.45	93.67
SCNpilot_cont_500_bf_scaffold_53245 Species: R_Phenylobacterium_70_10 (50%)	2	1242 bp	62.72	4.43	97.58
SCNpilot_cont_500_bf_scaffold_34317 Species: Stenotrophomonas maltophilia (50%)	2	1771 bp	67.98	5.65	93.68
SCNpilot_cont_500_bf_scaffold_59402 Species: Pseudoxanthomonas suwonensis (50%)	2	1131 bp	69.67	3.76	95.23
SCNpilot_cont_500_bf_scaffold_46482 Species: Xanthomonas axonopodis (100%)	2	1386 bp	67.53	5.95	75.97
SCNpilot_cont_500_bf_scaffold_40224 Species: Stenotrophomonas sp. RIT309 (50%)	2	1558 bp	68.87	6.90	97.43
SCNpilot_cont_500_bf_scaffold_49325 Species: Stenotrophomonas sp. RIT309 (50%)	2	1320 bp	72.80	5.30	92.27
SCNpilot_cont_500_bf_scaffold_19903 Species: Stenotrophomonas sp. SKA14 (50%)	2	2684 bp	71.46	6.05	95.57
SCNpilot_cont_500_bf_scaffold_34842 Species: RLO_Burkholderiales_61_40 (50%)	2	1750 bp	50.63	4.00	91.20
SCNpilot_cont_500_bf_scaffold_27634 Species: Stenotrophomonas maltophilia (100%)	2	2097 bp	68.62	5.13	97.71
SCNpilot_cont_500_bf_scaffold_40747 Species: Stenotrophomonas maltophilia (50%)	2	1543 bp	53.14	4.86	88.27
SCNpilot_cont_500_bf_scaffold_29668 Species: Stenotrophomonas rhizophila (50%)	2	1984 bp	67.69	8.57	55.95
SCNpilot_cont_500_bf_scaffold_30038 Species: Lysobacter daejeonensis (50%)	2	1965 bp	64.73	4.45	84.27
SCNpilot_cont_500_bf_scaffold_33854 Species: Stenotrophomonas maltophilia (100%)	2	1790 bp	70.34	5.87	91.34
SCNpilot_cont_500_bf_scaffold_66723 Species: Candidatus Thiomargarita nelsonii (50%)	2	1778 bp	70.19	4.92	74.92
SCNpilot_cont_500_bf_scaffold_20452 Species: Stenotrophomonas sp. RIT309 (50%)	2	2633 bp	61.98	4.27	94.11
SCNpilot_cont_500_bf_scaffold_18732 Species: Pseudoxanthomonas suwonensis (100%)	2	2811 bp	67.66	4.45	99.79
SCNpilot_cont_500_bf_scaffold_27389 Species: Lysobacter daejeonensis (50%)	2	2111 bp	71.25	4.86	99.48
SCNpilot_cont_500_bf_scaffold_50326 Species: Stenotrophomonas rhizophila (100%)	2	1299 bp	68.59	6.16	88.22
SCNpilot_cont_500_bf_scaffold_31675 Species: Rhodanobacter fulvus (50%)	2	3596 bp	66.96	4.24	92.60
SCNpilot_cont_500_bf_scaffold_34096 Species: Stenotrophomonas rhizophila (50%)	2	1779 bp	72.29	5.48	88.20
SCNpilot_cont_500_bf_scaffold_15546 Species: Stenotrophomonas rhizophila (100%)	2	3223 bp	69.41	6.59	96.90
SCNpilot_cont_500_bf_scaffold_62343 Species: Pseudoxanthomonas suwonensis (50%)	2	1081 bp	63.18	23.36	99.63
SCNpilot_cont_500_bf_scaffold_43461 Species: RHI_Gammaproteobacteria_63_22 (50%)	2	1464 bp	50.20	4.44	100.00
SCNpilot_cont_500_bf_scaffold_28601 Species: Xanthomonas campestris (50%)	2	2040 bp	69.95	5.39	99.85
SCNpilot_cont_500_bf_scaffold_24011 Species: Aeromonas hydrophila (50%)	2	2336 bp	64.73	4.71	93.62
SCNpilot_cont_500_bf_scaffold_31948 Species: Stenotrophomonas maltophilia (50%)	2	1870 bp	67.65	6.15	89.52
SCNpilot_cont_500_bf_scaffold_10115 Species: Stenotrophomonas maltophilia (50%)	2	4415 bp	67.95	8.15	99.95
SCNpilot_cont_500_bf_scaffold_12742 Species: Stenotrophomonas rhizophila (50%)	2	3730 bp	71.90	6.10	97.40
SCNpilot_cont_500_bf_scaffold_32047 Species: Xanthomonas campestris (50%)	2	1866 bp	71.70	5.36	91.48
SCNpilot_cont_500_bf_scaffold_58341 Species: Stenotrophomonas sp. RIT309 (50%)	2	1150 bp	62.78	5.65	71.74
SCNpilot_cont_500_bf_scaffold_26510 Species: Methyloversatilis universalis (50%)	2	2165 bp	69.01	6.81	87.02
SCNpilot_cont_500_bf_scaffold_57763 Species: Bordetella bronchiseptica (50%)	2	1160 bp	74.83	4.74	101.12
SCNpilot_cont_500_bf_scaffold_53341 Species: Stenotrophomonas maltophilia (50%)	2	2137 bp	64.16	3.86	87.88
SCNpilot_cont_500_bf_scaffold_20260 Species: Stenotrophomonas rhizophila (50%)	2	2653 bp	67.96	4.90	95.33
SCNpilot_cont_500_bf_scaffold_74792 Species: Hydrogenophaga sp. PBC (50%)	2	1558 bp	57.83	4.33	99.17
SCNpilot_cont_500_bf_scaffold_60812 Species: Burkholderia multivorans (100%)	2	1107 bp	65.94	6.10	100.00
SCNpilot_cont_500_bf_scaffold_38286 Species: Stenotrophomonas maltophilia (50%)	2	1619 bp	67.26	3.09	88.76
SCNpilot_cont_500_bf_scaffold_62149 Species: Stenotrophomonas maltophilia (50%)	2	1085 bp	74.29	5.99	100.09
SCNpilot_cont_500_bf_scaffold_48282 Species: Xanthomonas campestris (50%)	2	1342 bp	69.90	4.10	82.94
SCNpilot_cont_500_bf_scaffold_39183 Species: Stenotrophomonas maltophilia (50%)	2	1590 bp	67.04	5.19	86.42
SCNpilot_cont_500_bf_scaffold_36630 Species: Xanthomonas citri (50%)	2	1679 bp	46.04	4.76	66.11
SCNpilot_cont_500_bf_scaffold_15629 Species: Stenotrophomonas maltophilia (100%)	2	4118 bp	67.65	6.98	97.33
SCNpilot_cont_500_bf_scaffold_55116 Species: Xanthomonas sacchari (50%)	2	1208 bp	68.87	5.38	100.08
SCNpilot_cont_500_bf_scaffold_29266 Species: Photobacterium angustum (50%)	2	2006 bp	64.51	3.12	55.63
SCNpilot_cont_500_bf_scaffold_36642 Species: Xanthomonas sacchari (50%)	2	1679 bp	74.81	7.00	90.59

Displaying items 451-500 of 552 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNPILOT_EXPT_300_BF_Stenotrophomonas_69_97) and add all its contigs / scaffolds to the organism you choose below

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Other organism

SCNPILOT_EXPT_300_BF_Stenotrophomonas_69_97

SCNPILOT_CONT_500_BF_Xanthomonadales_69_7

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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