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SCNpilot_cont_500_bf_scaffold_14003_6

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_63_7

partial RP 38 / 55 MC: 2 BSCG 37 / 51 MC: 3 ASCG 10 / 38 MC: 2
Location: 4533..5111

Top 3 Functional Annotations

Value Algorithm Source
Cold shock protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2P878_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.5
  • Coverage: 192.0
  • Bit_score: 352
  • Evalue 3.30e-94
Cold-shock protein {ECO:0000313|EMBL:KGD94355.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.1
  • Coverage: 192.0
  • Bit_score: 355
  • Evalue 5.50e-95
cspA3; cold shock protein; K03704 cold shock protein (beta-ribbon, CspA family) similarity KEGG
DB: KEGG
  • Identity: 85.9
  • Coverage: 192.0
  • Bit_score: 344
  • Evalue 2.80e-92

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Taxonomy

Rhizobium sp. YS-1r → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 579
ATGGTGGACAAGATTTCGTCGAAAGGCGTCACTTTTTTCGAGGAATTCTCGAGTGAGCCCGTCGAACTGATCGAGGTGACGGGAGTCGTCAAATGGTTTGATGTCGCAAAGGGGTTCGGGTTCATCATCCCGGACAATGGAATGCAGGATGTTCTTCTGCATGTCACCTGCCTGAGGCGCGACGGATATCAAACTATTCTCGAGGGCACGCGCATCGTCGCGCTGGTTCAGAAGCGCGATCGCGGATACCAGGCGTTTCGCATTCTTTCGATGGACCAGTCGACCGCGATCCATCCCTCGCAACTGCCGCCGGTGCGCACCCATGTGCAGGTAACACCGACGAGCGGGCTGGAGCGAGCCCTGGTCAAGTGGTTCAATCGCACCAAGGGCTTCGGCTTCCTGACGCGCGGCGAAGGCACCGAGGATATCTTCATCCACATGGAAACGCTGCGTCGCTTCGGCCTCACCGAACTGCGTCCCGGCCAGGTCGTTCTGGTGCGCTTCGGCAATGGCGACAAGGGCCTGATGGCGGCGGAAATCCATCCGGATACGCCGAGTTTTCCCGGCAGGTCGCATTGA
PROTEIN sequence
Length: 193
MVDKISSKGVTFFEEFSSEPVELIEVTGVVKWFDVAKGFGFIIPDNGMQDVLLHVTCLRRDGYQTILEGTRIVALVQKRDRGYQAFRILSMDQSTAIHPSQLPPVRTHVQVTPTSGLERALVKWFNRTKGFGFLTRGEGTEDIFIHMETLRRFGLTELRPGQVVLVRFGNGDKGLMAAEIHPDTPSFPGRSH*