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SCNpilot_cont_500_bf_scaffold_36182_1

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_63_7

partial RP 38 / 55 MC: 2 BSCG 37 / 51 MC: 3 ASCG 10 / 38 MC: 2
Location: comp(2..259)

Top 3 Functional Annotations

Value Algorithm Source
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPZ9_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.4
  • Coverage: 86.0
  • Bit_score: 152
  • Evalue 2.20e-34
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR78335.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.4
  • Coverage: 86.0
  • Bit_score: 152
  • Evalue 3.10e-34
periplasmic binding protein/LacI transcriptional regulator; K10439 ribose transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 82.6
  • Coverage: 86.0
  • Bit_score: 141
  • Evalue 1.60e-31

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 258
ATGGGTCGGACACAATATCTTCTCGGCTGCGCAGCGGCCGTCGCCATGACGCTTTCCATGGGCGTTTCCAGCGCTTTCGCCGATACGTTCGCGCTCGTCACCATCAACCAGCAGGCGCTGTTCTTCAACCAGATCAATGACGGCGCCAATGCCGCCGCCAAGGCCGCAGGCGTCGATCTCGTGATCTTCAACGCCAACAACGTGCCCTCGGCACAGAACGACGCCATCGAAAACTACATCACCCAGAAGGTCGACGGC
PROTEIN sequence
Length: 86
MGRTQYLLGCAAAVAMTLSMGVSSAFADTFALVTINQQALFFNQINDGANAAAKAAGVDLVIFNANNVPSAQNDAIENYITQKVDG