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SCNPILOT_CONT_300_BF_Rhizobiales_63_7

SCNPILOT_CONT_500_BF_Rhizobiales_63_5
In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 5.47 Longest contig: 33.88 Kbp Bin length: 4.89 Mbp GC content: 63.49 %
Contigs count: 870 Features count: 5623 rRNAs count: 0 tRNAs count: 33

Genome completeness

partial RP 38 / 55 MC: 2 BSCG 37 / 51 MC: 3 ASCG 10 / 38 MC: 2
Displaying items 751-800 of 870 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_60475
Species: Neorhizobium galegae (50%)
2 1114 bp 61.94 4.49 99.37
SCNpilot_cont_500_bf_scaffold_31916
Species: Sinorhizobium fredii (100%)
2 1872 bp 65.33 3.87 95.51
SCNpilot_cont_500_bf_scaffold_32254
Species: Leisingera methylohalidivorans (100%)
2 1858 bp 64.59 4.04 100.11
SCNpilot_cont_500_bf_scaffold_50058
Species: Rhizobium sp. UR51a (50%)
2 1304 bp 62.65 4.22 90.18
SCNpilot_cont_500_bf_scaffold_37993
Species: Shinella sp. DD12 (50%)
2 1630 bp 60.06 5.06 76.20
SCNpilot_cont_500_bf_scaffold_58805
Species: Rhizobium mesoamericanum (50%)
2 1142 bp 57.88 3.50 80.91
SCNpilot_cont_500_bf_scaffold_24242
Species: Aquamicrobium defluvii (50%)
2 2318 bp 66.57 4.21 96.68
SCNpilot_cont_500_bf_scaffold_23266
Species: Rhizobium sp. (50%)
2 2389 bp 61.16 6.49 77.10
SCNpilot_cont_500_bf_scaffold_38467
Species: Sinorhizobium meliloti (50%)
2 1613 bp 67.82 4.49 100.06
SCNpilot_cont_500_bf_scaffold_36027
Species: Phyllobacterium sp. YR531 (50%)
2 1701 bp 67.49 4.56 74.07
SCNpilot_cont_500_bf_scaffold_45447
Species: Rhizobium sp. CF142 (50%)
2 1412 bp 62.46 5.84 98.16
SCNpilot_cont_500_bf_scaffold_16773
Species: Agrobacterium arsenijevicii (100%)
2 3045 bp 56.91 5.09 92.81
SCNpilot_cont_500_bf_scaffold_31167
Species: Agrobacterium tumefaciens (50%)
2 1907 bp 58.31 7.21 62.30
SCNpilot_cont_500_bf_scaffold_51147
Species: Neorhizobium galegae (50%)
2 1282 bp 66.07 3.51 99.45
SCNpilot_cont_500_bf_scaffold_32531
Species: Nitratireductor pacificus (100%)
2 1846 bp 65.01 5.82 90.03
SCNpilot_cont_500_bf_scaffold_35465
Species: Sinorhizobium meliloti (50%)
2 1725 bp 64.23 6.23 96.00
SCNpilot_cont_500_bf_scaffold_16539
Species: Nitratireductor indicus (50%)
2 3083 bp 63.57 4.38 99.94
SCNpilot_cont_500_bf_scaffold_54031
Species: Rhizobium sp. CCGE 510 (50%)
2 1228 bp 61.56 4.89 71.58
SCNpilot_cont_500_bf_scaffold_48232
Species: Rhizobium sp. Pop5 (50%)
2 1343 bp 62.25 6.52 58.97
SCNpilot_cont_500_bf_scaffold_39390
Species: Sphingobium quisquiliarum (50%)
2 1584 bp 64.90 5.05 99.05
SCNpilot_cont_500_bf_scaffold_33644
Species: Rhizobium gallicum (50%)
2 1797 bp 60.49 5.43 98.66
SCNpilot_cont_500_bf_scaffold_59209
Species: Agrobacterium rubi (50%)
2 1135 bp 60.09 3.52 99.12
SCNpilot_cont_500_bf_scaffold_30087
Species: Rhizobium sp. CF080 (50%)
2 1962 bp 65.34 4.20 96.64
SCNpilot_cont_500_bf_scaffold_36583
Species: Rhizobium leguminosarum (50%)
2 1681 bp 59.85 3.57 86.56
SCNpilot_cont_500_bf_scaffold_32311
Species: Rhizobium sp. CF142 (50%)
2 1855 bp 63.99 6.33 98.33
SCNpilot_cont_500_bf_scaffold_10903
Species: Rhizobium sp. CF122 (50%)
2 4180 bp 66.72 5.56 87.63
SCNpilot_cont_500_bf_scaffold_60282
Species: Rhizobium tropici (50%)
2 1117 bp 61.32 4.25 62.58
SCNpilot_cont_500_bf_scaffold_66787
Species: Shinella sp. DD12 (50%)
2 1791 bp 63.37 5.58 96.98
SCNpilot_cont_500_bf_scaffold_61948
Species: Sinorhizobium meliloti (50%)
2 1088 bp 66.64 3.45 98.71
SCNpilot_cont_500_bf_scaffold_21865
Species: Nitratireductor indicus (50%)
2 2509 bp 66.36 5.98 85.01
SCNpilot_cont_500_bf_scaffold_58357
Species: Rhizobium sp. (50%)
2 1150 bp 67.30 3.91 99.13
SCNpilot_cont_500_bf_scaffold_45245
Species: Shinella sp. DD12 (100%)
2 1417 bp 61.96 4.41 79.18
SCNpilot_cont_500_bf_scaffold_60292
Species: Shinella sp. DD12 (50%)
2 1116 bp 61.83 3.81 70.97
SCNpilot_cont_500_bf_scaffold_39424
Species: Rhizobium sp. (50%)
2 1583 bp 65.19 4.42 100.06
SCNpilot_cont_500_bf_scaffold_50135
Species: Rhizobium sp. UR51a (50%)
2 1303 bp 65.23 4.80 90.48
SCNpilot_cont_500_bf_scaffold_31488
Species: Nitratireductor indicus (100%)
2 1892 bp 62.21 3.70 78.01
SCNpilot_cont_500_bf_scaffold_21625
Species: Amycolatopsis methanolica (50%)
2 2530 bp 70.04 5.24 100.08
SCNpilot_cont_500_bf_scaffold_37051
Species: Rhizobium sp. (50%)
2 1665 bp 57.42 4.80 90.81
SCNpilot_cont_500_bf_scaffold_51217
Species: Agrobacterium tumefaciens (50%)
2 1281 bp 55.43 5.46 38.64
SCNpilot_cont_500_bf_scaffold_47498
Species: Rhizobium sp. Pop5 (50%)
2 1361 bp 62.16 4.78 92.58
SCNpilot_cont_500_bf_scaffold_38039
Species: Sagittula stellata (50%)
2 1628 bp 59.52 4.61 86.06
SCNpilot_cont_500_bf_scaffold_43017
Species: Rhizobium freirei (50%)
2 1475 bp 66.10 4.75 99.05
SCNpilot_cont_500_bf_scaffold_18562
Species: Shinella sp. DD12 (50%)
2 2828 bp 65.13 4.42 91.55
SCNpilot_cont_500_bf_scaffold_32095
Species: Rhizobium sp. (50%)
2 1864 bp 65.99 5.23 99.30
SCNpilot_cont_500_bf_scaffold_54349
Species: Rhizobium sp. PDO1-076 (50%)
2 1223 bp 61.57 4.70 98.61
SCNpilot_cont_500_bf_scaffold_25458
Species: Methylobacterium mesophilicum (50%)
2 2232 bp 60.39 3.92 86.42
SCNpilot_cont_500_bf_scaffold_18315
Species: Rhizobium sp. CF122 (50%)
2 2857 bp 63.28 4.46 85.16
SCNpilot_cont_500_bf_scaffold_36895
Species: Rhizobium grahamii (50%)
2 1670 bp 70.12 6.29 100.24
SCNpilot_cont_500_bf_scaffold_26818
Species: Oligotropha carboxidovorans (50%)
2 2147 bp 66.19 3.84 93.76
SCNpilot_cont_500_bf_scaffold_47263
Species: Shinella sp. DD12 (50%)
2 1367 bp 60.86 4.57 88.44
Displaying items 751-800 of 870 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.