ggKbase home page

SCNpilot_cont_500_bf_scaffold_18233_1

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 4 ASCG 10 / 38 MC: 1
Location: comp(3..2864)

Top 3 Functional Annotations

Value Algorithm Source
TonB-linked outer membrane protein, SusC/RagA family n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G2K1_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 58.5
  • Coverage: 966.0
  • Bit_score: 1177
  • Evalue 0.0
  • rbh
Membrane protein {ECO:0000313|EMBL:KIA92446.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.7
  • Coverage: 965.0
  • Bit_score: 1183
  • Evalue 0.0
TonB-dependent receptor plug similarity KEGG
DB: KEGG
  • Identity: 40.7
  • Coverage: 980.0
  • Bit_score: 718
  • Evalue 3.60e-204

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedobacter kyungheensis → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 2862
CTGAAAGGGTCGAATACGGGCACAAGTACGGATATAAATGGCAGATTTACGCTTAATATTCCTGGCAACAGGGGTACATTGATAATCTCATTTGTAGGATATATTACCCGGGAGGTAGTTGCAGAAGGAACTGCAGATTTGAATATTGTTCTTAAATCTGAAGATAAGCAGACAGACGAAGTCGTGGTAATTGCCTACGGATCGGTAAAAAAGTCCGATCTCACCGGCGCTGTATCCTCGGTATCGGCCGAGAAAGTTACACAGGTAAAAGGCGTCTCTAATGTAGCCGGAGCCCTCCAGGGACAGGCCTCGGGAGTGCAGGTGATACAACGTTCAGGTCAGCCAGGAGAGGGAGTATCCATAAAAATCCGGGGTACGAATTCTATACAGGCAGGCAATGATCCTTTGTACGTAGTTGATGGTCTTCCTTTGGATGGTTTGACCGCCCAGCTTAATCCCAACGATATAGAAACAGTGGAAGTATTAAAGGATGCTTCCTCAACGGCTATATACGGATCAAGAGGTGCGAACGGCGTCATTATGATCACCACCAAAAAGGGGAATGAAGGGAAAGTAAGGGTATCTTACGGCGGTTATTATGGTGTACAGTCGCTGAGAAAGAAACTGGATCTTATTAATGCGCAGGAATTTGCCACACTGCAAAATGAGGTAGCTGCAAATGACGGAATGCCTGCGGTATGGACGGATGCACAAATTGATTCGCTCAAAGGAAAAGGCACAGACTGGCAGGATCTTGTGTACCGGAGCGCACCGGTGCAAAATCATGATATTTCATTGTCGGGTGGTACTGCCGGTACAAAATTCTATACTTCAGTTGGCTACTACGATCAGGATGGGATTATACAAAACTCTAAGTTTAAGCGTTTTTCTTTCCGGGGGAATCTTGATCAGAAGATCAGCGAAAAGCTTGTAGCGAATATTAGCCTCTCTTTACAGCAGTCCGACTATTTTCAGAATAATTATTTCAATGCCGATGGTGGAGGAGGTGTTCCTTTTACCACAATGGTCATGCCGCCTACACAAGGCGTATATGATGCCACTGGGAAATATACCATCTTTACCGGTGTGTCCTGGGGGCAAACCAATCCCTATGCCATGTCAAAAGAAGAATATCGGCCTAACAGCTCTTTCAGGGTGATAGGAAATGCCGTGCTGACTTATGCTATAACTTCTGATCTCAAAGTAAGACTTAGCGCCGGTGTGGATAATAGCTGGAACAAATCAGACTATTATGCGCCGAGCACTCTGAGTCTATATGTCAATGGAGGGGCGTATAAGAATTATGGTAATACCTCAGCATTTGTTAATGAAAACCTCCTCACCTATAAGAAGCAATTAGGTAAACATAATATCGACGCCCTGGCCGGGATTACTTATCAGCAAAACAGATCAGAGGGTTTGAATAGCGGTACTTTTTCCGGATTCCTTACTGATATCTACCTGGATAATAATCTGGCAGCAGCCAGTGTGAAACCGTCTAATACTAATTCCACTTATTCCGATTCGAAATTATTATCTTATCTCGGGCGTATCAACTATGCTTACGACGGGAAATACCTGCTCACACTGACCGGCAGGTATGATGGCTCATCAAAATTCAGCGAGAACAATAAATACGCATTTTTCCCTTCAGGGGCTGTAGCATGGAGGATCTCAAAGGAGTCATTTATGGAAAATGCTAGGGCTGTTTCAAATCTCAAACTCAGGGTGAGCTATGGCAAATCGGGTAACCAGGCTATTTCACCTTACCAGACACTGGGGCAACTATCCACGACCAGCGTTACGTTTAACAATACTGCTACGACAACCTATTATTCAAGCCGCCTGGAAAATAAATCCCTGCGATGGGAAACCACCAGCCAGTTTGATATAGGGCTTGACCTGGGGTTATTTAATGAGCGATTGCAACTTACGGCAGACTATTACAGCAAAAAAACCACTGATCTGCTGCTTGATGTAACTCTGCCGCCTAATACAGGCTTCGGAAGTGTATTGCAAAATGTGGGCGAAACCGGTAACAGAGGTTTTGAATTTTTGCTGAACGGGGCAATACTTACCGGTAATGGTTTGAATTGGAACTCCACATTCAACCTTACCAGTAATAAGACCCGGTTGATTGATCTCGGAAAAGATGCATTGGGTAATCCCATTACCTACAAGGAAGTAGGTACCGGGGGAAACTGGTTCCCTATGCTGATAGGTAACTCTATGCAGCAATTGTATGGATATAAAGTGATAGGCGTATACCAAAGTGATGCTGATGCAGTAGCTAATGGTGAACCGACAAAAAAAGCCGGCAACTATAAATTCCAGGATACAGACGGCAACGGCGTGGTAGATGGTAATGACAGGATTGTGCTCACCCATTTTGAACCTAAGTTCACTTTTGGATTTGGAAATAGCTTCTCTTATAAAAACTTTGGTTTATCTTTTTTGTTTGTGGGTTCTTATGGTAATGATATTGCTAATGAATTCAGGAAATATAATATCACACTCAACGGTAAATGGACGCCTACTCAGGAAGCTTATGACAACCGGTGGCAGGCAGGAAAAGGTACAAATATGTTTGATAAGCCGAGCGCTAACAGCGGGAATGATATTCGTGATTATGCCAACAGCCTGTGGGTGGAAAATGGCTCCTATGTCCGCTTGAGAGATATTACGCTGTCATACAATGTCCCGGTTTCCTTTACCAACCGCATGAAGATAGCTTCGCTGGAGCTTTATATCAGTGCACAGAATTTTATAACCATTACGAAGTATTCCGGTTATGATCCGGAAGCGGCATGGCAAAGTGCGACCATAAACGGATGGGATCGTGGGAACTATCCTGCTACAAAA
PROTEIN sequence
Length: 954
LKGSNTGTSTDINGRFTLNIPGNRGTLIISFVGYITREVVAEGTADLNIVLKSEDKQTDEVVVIAYGSVKKSDLTGAVSSVSAEKVTQVKGVSNVAGALQGQASGVQVIQRSGQPGEGVSIKIRGTNSIQAGNDPLYVVDGLPLDGLTAQLNPNDIETVEVLKDASSTAIYGSRGANGVIMITTKKGNEGKVRVSYGGYYGVQSLRKKLDLINAQEFATLQNEVAANDGMPAVWTDAQIDSLKGKGTDWQDLVYRSAPVQNHDISLSGGTAGTKFYTSVGYYDQDGIIQNSKFKRFSFRGNLDQKISEKLVANISLSLQQSDYFQNNYFNADGGGGVPFTTMVMPPTQGVYDATGKYTIFTGVSWGQTNPYAMSKEEYRPNSSFRVIGNAVLTYAITSDLKVRLSAGVDNSWNKSDYYAPSTLSLYVNGGAYKNYGNTSAFVNENLLTYKKQLGKHNIDALAGITYQQNRSEGLNSGTFSGFLTDIYLDNNLAAASVKPSNTNSTYSDSKLLSYLGRINYAYDGKYLLTLTGRYDGSSKFSENNKYAFFPSGAVAWRISKESFMENARAVSNLKLRVSYGKSGNQAISPYQTLGQLSTTSVTFNNTATTTYYSSRLENKSLRWETTSQFDIGLDLGLFNERLQLTADYYSKKTTDLLLDVTLPPNTGFGSVLQNVGETGNRGFEFLLNGAILTGNGLNWNSTFNLTSNKTRLIDLGKDALGNPITYKEVGTGGNWFPMLIGNSMQQLYGYKVIGVYQSDADAVANGEPTKKAGNYKFQDTDGNGVVDGNDRIVLTHFEPKFTFGFGNSFSYKNFGLSFLFVGSYGNDIANEFRKYNITLNGKWTPTQEAYDNRWQAGKGTNMFDKPSANSGNDIRDYANSLWVENGSYVRLRDITLSYNVPVSFTNRMKIASLELYISAQNFITITKYSGYDPEAAWQSATINGWDRGNYPATK