ggKbase home page

SCNpilot_cont_500_bf_scaffold_28444_4

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 4 ASCG 10 / 38 MC: 1
Location: 2011..3159

Top 3 Functional Annotations

Value Algorithm Source
Anti-FecI sigma factor, FecR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7R7_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 41.8
  • Coverage: 409.0
  • Bit_score: 303
  • Evalue 3.50e-79
  • rbh
Putative anti-sigma factor {ECO:0000313|EMBL:GAO43369.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.5
  • Coverage: 389.0
  • Bit_score: 324
  • Evalue 2.70e-85
anti-FecI sigma factor FecR similarity KEGG
DB: KEGG
  • Identity: 41.8
  • Coverage: 409.0
  • Bit_score: 303
  • Evalue 1.10e-79
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Flavihumibacter petaseus → Flavihumibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1149
ATGGATATCAAACAAGCCAGGGAACTGTTGCAACGGTACCAGACGGGTAATATTACCCGGTCGGAAAAAGAATTAGTTGAAAGCTGGTATCGTCAATTGATAGAGACCGGGGAATGGGAATGGGGTGAAGGAGAGAAAGAGCAATTGCAGCAGACGCTTGAATCGGCTATCCTGAAAAAAATACAGAGCCCGCCGGGGAGGCGTGGTATATATTCCGTGTCTCGAAGGGGTTGGTGGGTAGCGGCTTCGGTTGCTATCCTGATAGGGGTAGGGGCATATTTTTTGTTTACTGGCACAAGTCTGCAAAAGCCTCAAATTGTACAGGCAAAATTGCCCAATGATGTGCATGCTCCACAGTCTAACAGGGCATTGATCACGTTGGCAAACGGGCAACAAATTTACCTGGATAGCATAAGCGATGGCTCCACAGTGTCGGAAGGGACCGGGAAGCTTGTAAAACTATCCAGTGGAGAAATAGTGTACCGGGCGAATGGGATATCCGGGGACAAAATGGAGTATAATACATTATCAAATCCCAGGGGCAGCAAGGTGATCAACATGCTCCTGACGGATGGCACGAGGGTTTGGCTGAATGCCGGATCTTCTTTGAGCTATCCCGTTGTATTTGCAGGTAATACGAGAGAGGTTGCTGTGACAGGGGAGGCTTATTTTGAAGTAGCGCATGATAAATCAAAGCAATTTATAGTTCATAACGGCGGGATGGATGTAGTGGTAACGGGCACACATTTTAACGTAAACGCCTTTGAAGACGACGATAATAATATAAAGGTGACCCTGCTGGAGGGATCTGTAAAAATAAAGACCAGGAGCAGTAATGGTTCATTAAAACCCGGGCAGCAGGCTTTAGTGCACAATGATGTAAGAATAGTAAGCGATGTGAATGTTGAAAACGTGATGGCATGGAAGAATGGTTATTTTCAATTTGACAGGGCCGGGCTTCACAGCGTGTTAAAGCAGGTAGCGCGATGGTATGACGTGGAGGTGGTGTACGAAGGGAACAACGAGGAGAGACAATTTGTTGGAGAAATAGAAAGAGATCTGAGCCTGTCGGAGGTGCTCAGGATCCTGGAGGTAAATAAAGTGTCTTTTACAATAGAAGGGAAAAAACTTATTATAAAGCCAGATTAA
PROTEIN sequence
Length: 383
MDIKQARELLQRYQTGNITRSEKELVESWYRQLIETGEWEWGEGEKEQLQQTLESAILKKIQSPPGRRGIYSVSRRGWWVAASVAILIGVGAYFLFTGTSLQKPQIVQAKLPNDVHAPQSNRALITLANGQQIYLDSISDGSTVSEGTGKLVKLSSGEIVYRANGISGDKMEYNTLSNPRGSKVINMLLTDGTRVWLNAGSSLSYPVVFAGNTREVAVTGEAYFEVAHDKSKQFIVHNGGMDVVVTGTHFNVNAFEDDDNNIKVTLLEGSVKIKTRSSNGSLKPGQQALVHNDVRIVSDVNVENVMAWKNGYFQFDRAGLHSVLKQVARWYDVEVVYEGNNEERQFVGEIERDLSLSEVLRILEVNKVSFTIEGKKLIIKPD*