ggKbase home page

SCNpilot_cont_500_bf_scaffold_50012_2

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 4 ASCG 10 / 38 MC: 1
Location: 537..1130

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niabella soli DSM 19437 RepID=H1NL78_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 50.3
  • Coverage: 171.0
  • Bit_score: 163
  • Evalue 2.90e-37
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO42771.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.4
  • Coverage: 180.0
  • Bit_score: 168
  • Evalue 7.50e-39
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 42.8
  • Coverage: 180.0
  • Bit_score: 151
  • Evalue 2.10e-34

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Flavihumibacter petaseus → Flavihumibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 594
ATGATTGACGCCAATCTTCATACCATATGCCAGAAAATAACAAAAGGCGACGATCAGGGAGCTTTTGGCGAACTCTTTTCTCTGTTGTATCCGAAGCTTTTACCTTTTGCGGTTTCCATTCTCAATAGCCGCGAATCAGGAGAAGAAGTAGTGGAAGATGTTTTTGTGAAACTTTGGCAAAACAGGAAAATGTTAGATGCCATTAAAAATATCAAGTATTACCTGTTGGTTGCGGTGAAACATACGTCTCTTGACTACCTTAACAGAGAAAAGAAAACACAACATGAAAGCCTTGAAAATATTGATTTAGAGTTTGGAGATTTTGAGCTGAACCCTGAGAACGCGCTGATTTCAAGAGAAAACATAGTTGCAATTCAAAAAGAGATCGAATCCCTTCCCAACAGATGTAAATTAATTTTCCGCCTTGTAAAGGAAAATGGACTGAAATACAAAGAAGTGGGTGAGTTGCTCAATATAAGTACAAAAACTGTTGAAACTCAAATGACGATTGCCCTAAGCCGGATAGGGTCTGCCTTAAGAAAACAACTTGCCGCAGAAGGTACCACCGATTTAAAAAAGTTAAAAGAAGGGTAG
PROTEIN sequence
Length: 198
MIDANLHTICQKITKGDDQGAFGELFSLLYPKLLPFAVSILNSRESGEEVVEDVFVKLWQNRKMLDAIKNIKYYLLVAVKHTSLDYLNREKKTQHESLENIDLEFGDFELNPENALISRENIVAIQKEIESLPNRCKLIFRLVKENGLKYKEVGELLNISTKTVETQMTIALSRIGSALRKQLAAEGTTDLKKLKEG*