ggKbase home page

SCNpilot_cont_500_bf_scaffold_50051_3

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 4 ASCG 10 / 38 MC: 1
Location: comp(707..1303)

Top 3 Functional Annotations

Value Algorithm Source
Linocin-M18 n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HQI6_PSEUO similarity UNIREF
DB: UNIREF100
  • Identity: 72.4
  • Coverage: 196.0
  • Bit_score: 295
  • Evalue 5.00e-77
Bacteriocin {ECO:0000313|EMBL:ETM63258.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.4
  • Coverage: 196.0
  • Bit_score: 295
  • Evalue 7.00e-77
Linocin_M18 bacteriocin protein similarity KEGG
DB: KEGG
  • Identity: 71.4
  • Coverage: 196.0
  • Bit_score: 292
  • Evalue 1.30e-76

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pseudomonas sp. M1 → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 597
GTGAAGGCCTTGGTGGAGCTCCGAGCGCCGTTTGAGCTGTCGAGGCAGGCTATTGACGATGTGGAAAGAGGCTCTTCAGATTCGGACTGGGATCCGTTGAAAGATGCGGCAAAAAAAATCGCTTTTGCCGAAGACCACGCTGTATTTGAAGGTTATGAGGCGGCCGGCATTCGGGGTATACAGCAGGAGAGCAGCAATGAATCACTAACGCTTCCTTCCAATGTGCGGCATTATCCTGATGTTATTGCGCAGGCGGTAAGCCGGCTGCGGCTTGCCGGGGTCAACGGGCCTTATGTGCTGGTGCTGGGAGCAGATGCTTATACGCTCGCCACCGGCGGCAGCGACGAAGGGTACCCGTTGCTGCAGCATATTCACCGGCTTGTTGAGGAGGACATTATCTGGGCGCCGGCCATCAGCGGCGGTTATGTGCTTTCTGCCCGCGGCGGCGATTTTGAGCTGGATCTCGGCCAGGATGTTTCCATCGGCTATACCAGCCATTCCGAAACTTCCGTGCAGCTCTACCTGCAGGAGAGCTTTACTTTCCGGGTGCTGACTACTGAGGCTTCGGTAGTGCTTTCGGCGGCGGAAAAGAAATAA
PROTEIN sequence
Length: 199
VKALVELRAPFELSRQAIDDVERGSSDSDWDPLKDAAKKIAFAEDHAVFEGYEAAGIRGIQQESSNESLTLPSNVRHYPDVIAQAVSRLRLAGVNGPYVLVLGADAYTLATGGSDEGYPLLQHIHRLVEEDIIWAPAISGGYVLSARGGDFELDLGQDVSIGYTSHSETSVQLYLQESFTFRVLTTEASVVLSAAEKK*