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SCNpilot_cont_500_bf_scaffold_45023_1

Organism: SCNPILOT_EXPT_750_P_Devosia_62_26

partial RP 29 / 55 MC: 1 BSCG 32 / 51 MC: 2 ASCG 9 / 38
Location: 3..419

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F122_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 68.4
  • Coverage: 136.0
  • Bit_score: 195
  • Evalue 4.90e-47
RNA polymerase sigma factor {ECO:0000313|EMBL:KKC31049.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.3
  • Coverage: 138.0
  • Bit_score: 227
  • Evalue 1.20e-56
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 67.6
  • Coverage: 136.0
  • Bit_score: 193
  • Evalue 3.40e-47

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Taxonomy

Devosia psychrophila → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 417
GACCGGGCCGAAGCAGAGGAAGCGATCCAGGAAGTGTATGTAAAGATCTGGTATCGGGCCGATCGGTTCGTTGCCGGCCAGGCCAGCCCCATAAGCTGGCTGGTGGCCGTCGCCCGCAATCATGCCCTCGACATTTTGCGCACCCGCCGCCCCGCCGCGGCCGATATCGACACCGTTCTCGATATCGCCGACCCTGCGCCTTCGCCCGAACGCATGACGGCGGACAGCCAGGATCGCGCGCGCATCGAACACTGTCTCGGCACCCTCGAAAGCGATCGCGCCGATGCCGTGCGCGGCGCCTATCTCGATGGCTATTCCTATGAAGAATTGGCTTCCCGTCATGCCGTGCCGTTGAATACCATGCGTACATGGCTGCGGCGCAGCCTCATCAAGCTGAAAGACTGTCTGGCAGCATGA
PROTEIN sequence
Length: 139
DRAEAEEAIQEVYVKIWYRADRFVAGQASPISWLVAVARNHALDILRTRRPAAADIDTVLDIADPAPSPERMTADSQDRARIEHCLGTLESDRADAVRGAYLDGYSYEELASRHAVPLNTMRTWLRRSLIKLKDCLAA*