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SCNPILOT_EXPT_750_P_Devosia_62_26

SCNPILOT_CONT_500_BF_Devosia_63_4
In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy: Devosia  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 4.28 Longest contig: 9.96 Kbp Bin length: 2.04 Mbp GC content: 62.71 %
Contigs count: 941 Features count: 2775 rRNAs count: 0 tRNAs count: 15

Genome completeness

partial RP 29 / 55 MC: 1 BSCG 32 / 51 MC: 2 ASCG 9 / 38
Displaying items 551-600 of 941 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_48175
Species: Devosia chinhatensis (50%)
2 1345 bp 59.03 3.53 69.59
SCNpilot_cont_500_bf_scaffold_46479
Species: Devosia geojensis (50%)
2 1386 bp 64.50 3.43 94.16
SCNpilot_cont_500_bf_scaffold_63600
Species: Devosia psychrophila (100%)
2 1060 bp 65.19 3.07 97.64
SCNpilot_cont_500_bf_scaffold_45672
Species: Devosia soli (100%)
2 1406 bp 60.95 4.80 79.59
SCNpilot_cont_500_bf_scaffold_54488
Species: Devosia geojensis (50%)
2 1220 bp 62.21 3.69 79.67
SCNpilot_cont_500_bf_scaffold_52444
Species: Devosia riboflavina (50%)
2 1256 bp 66.48 3.98 94.59
SCNpilot_cont_500_bf_scaffold_61869
Species: Devosia soli (50%)
2 1090 bp 62.39 3.90 93.03
SCNpilot_cont_500_bf_scaffold_23250
Species: Devosia chinhatensis (50%)
2 2390 bp 60.04 3.45 94.14
SCNpilot_cont_500_bf_scaffold_62311
Species: Devosia geojensis (50%)
2 1082 bp 60.72 3.23 86.51
SCNpilot_cont_500_bf_scaffold_56591
Species: Devosia epidermidihirudinis (50%)
2 1180 bp 61.10 4.03 94.83
SCNpilot_cont_500_bf_scaffold_31909
Species: Devosia chinhatensis (50%)
2 1872 bp 64.16 4.81 87.82
SCNpilot_cont_500_bf_scaffold_57179
Species: Devosia psychrophila (50%)
2 1170 bp 64.87 6.20 99.49
SCNpilot_cont_500_bf_scaffold_30031
Species: Devosia geojensis (50%)
2 1965 bp 67.84 5.47 98.02
SCNpilot_cont_500_bf_scaffold_25864
Species: Sphingomonas sp. TTNP3 (50%)
2 2207 bp 64.61 4.42 98.82
SCNpilot_cont_500_bf_scaffold_44212
Species: Devosia sp. LC5 (100%)
2 1444 bp 61.22 4.33 88.71
SCNpilot_cont_500_bf_scaffold_37729
Species: Devosia riboflavina (50%)
2 1640 bp 63.23 3.66 96.95
SCNpilot_cont_500_bf_scaffold_43945
Species: Devosia riboflavina (50%)
2 1451 bp 62.78 5.00 92.21
SCNpilot_cont_500_bf_scaffold_42113
Species: Devosia sp. LC5 (50%)
2 1501 bp 64.22 3.66 90.94
SCNpilot_cont_500_bf_scaffold_51893
Species: Devosia chinhatensis (50%)
2 1268 bp 60.49 3.35 86.83
SCNpilot_cont_500_bf_scaffold_32506
Species: Rhizobium sp. Pop5 (50%)
2 1847 bp 62.64 5.41 83.00
SCNpilot_cont_500_bf_scaffold_61623
Species: Devosia riboflavina (100%)
2 1094 bp 66.36 3.43 100.37
SCNpilot_cont_500_bf_scaffold_39859
Species: Devosia riboflavina (50%)
2 1569 bp 59.66 2.71 81.07
SCNpilot_cont_500_bf_scaffold_21539
Species: Devosia chinhatensis (100%)
2 2538 bp 65.01 3.84 92.91
SCNpilot_cont_500_bf_scaffold_62064
Species: Devosia sp. LC5 (50%)
2 1086 bp 59.94 4.37 93.09
SCNpilot_cont_500_bf_scaffold_65168
Species: Devosia soli (50%)
2 1034 bp 53.09 3.87 93.13
SCNpilot_cont_500_bf_scaffold_9621
Species: Devosia chinhatensis (100%)
2 4574 bp 61.63 4.37 87.82
SCNpilot_cont_500_bf_scaffold_32509
Species: Devosia chinhatensis (100%)
2 1847 bp 69.03 3.93 99.73
SCNpilot_cont_500_bf_scaffold_26198
Species: Devosia chinhatensis (100%)
2 2184 bp 59.75 3.43 97.80
SCNpilot_cont_500_bf_scaffold_47410
Species: Rhizobium sp. UR51a (50%)
2 1363 bp 60.82 4.77 98.61
SCNpilot_cont_500_bf_scaffold_34079
Species: Devosia chinhatensis (50%)
2 1780 bp 63.26 3.79 86.97
SCNpilot_cont_500_bf_scaffold_54507
Species: Devosia soli (50%)
2 1219 bp 59.97 3.49 100.16
SCNpilot_cont_500_bf_scaffold_65684
Species: Devosia chinhatensis (50%)
2 1027 bp 63.29 3.16 93.48
SCNpilot_cont_500_bf_scaffold_57702
Species: Devosia riboflavina (50%)
2 1161 bp 64.34 3.88 100.26
SCNpilot_cont_500_bf_scaffold_56863
Species: Devosia riboflavina (50%)
2 1175 bp 65.28 2.98 100.34
SCNpilot_cont_500_bf_scaffold_50833
Species: Pelagibacterium halotolerans (100%)
2 1288 bp 66.15 3.88 99.92
SCNpilot_cont_500_bf_scaffold_61379 2 1098 bp 60.02 6.38 99.73
SCNpilot_cont_500_bf_scaffold_60487
Species: Devosia sp. DDB001 (50%)
2 1113 bp 64.42 3.59 100.00
SCNpilot_cont_500_bf_scaffold_30560
Species: Devosia chinhatensis (100%)
2 1936 bp 63.58 4.39 84.45
SCNpilot_cont_500_bf_scaffold_28840
Species: Devosia limi (50%)
2 2029 bp 63.58 3.08 92.26
SCNpilot_cont_500_bf_scaffold_35441
Species: Devosia soli (50%)
2 1725 bp 64.12 4.78 100.35
SCNpilot_cont_500_bf_scaffold_33353
Species: Nitratireductor aquibiodomus (100%)
2 1810 bp 65.03 4.83 99.78
SCNpilot_cont_500_bf_scaffold_48461
Species: Devosia sp. LC5 (50%)
2 1338 bp 62.33 4.11 94.62
SCNpilot_cont_500_bf_scaffold_50837
Species: Devosia psychrophila (50%)
2 1288 bp 62.27 4.08 55.20
SCNpilot_cont_500_bf_scaffold_49861
Species: Nitrobacter winogradskyi (100%)
2 1308 bp 57.95 4.20 44.50
SCNpilot_cont_500_bf_scaffold_47678
Species: Devosia soli (50%)
2 1356 bp 66.74 5.72 100.22
SCNpilot_cont_500_bf_scaffold_53543
Species: Devosia riboflavina (50%)
2 1237 bp 60.55 3.23 66.69
SCNpilot_cont_500_bf_scaffold_62847
Species: Devosia chinhatensis (50%)
2 1073 bp 66.73 2.80 99.53
SCNpilot_cont_500_bf_scaffold_51911
Species: Devosia chinhatensis (50%)
2 1267 bp 64.56 5.52 94.71
SCNpilot_cont_500_bf_scaffold_47423
Species: Devosia sp. LC5 (50%)
2 1363 bp 60.75 4.95 66.03
SCNpilot_cont_500_bf_scaffold_30566
Species: Devosia chinhatensis (50%)
2 1935 bp 61.76 4.26 79.38
Displaying items 551-600 of 941 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.