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SCNPILOT_EXPT_750_P_Devosia_62_26

SCNPILOT_CONT_500_BF_Devosia_63_4
In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy: Devosia  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 4.28 Longest contig: 9.96 Kbp Bin length: 2.04 Mbp GC content: 62.71 %
Contigs count: 941 Features count: 2775 rRNAs count: 0 tRNAs count: 15

Genome completeness

partial RP 29 / 55 MC: 1 BSCG 32 / 51 MC: 2 ASCG 9 / 38
Displaying items 651-700 of 941 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_37276
Species: Devosia chinhatensis (50%)
2 1657 bp 65.00 5.43 91.97
SCNpilot_cont_500_bf_scaffold_39148
Species: Devosia chinhatensis (50%)
2 1591 bp 61.53 4.24 88.81
SCNpilot_cont_500_bf_scaffold_52513
Species: alpha proteobacterium BAL199 (100%)
2 2434 bp 67.01 4.42 92.69
SCNpilot_cont_500_bf_scaffold_56914
Species: Devosia chinhatensis (100%)
2 1175 bp 61.02 5.11 74.04
SCNpilot_cont_500_bf_scaffold_35742
Species: Devosia epidermidihirudinis (50%)
2 1713 bp 63.81 4.38 88.62
SCNpilot_cont_500_bf_scaffold_39150
Species: bacterium YEK0313 (50%)
2 1591 bp 61.97 3.14 89.38
SCNpilot_cont_500_bf_scaffold_29471
Species: Devosia psychrophila (50%)
2 1996 bp 64.88 4.38 93.19
SCNpilot_cont_500_bf_scaffold_51443
Species: Devosia sp. LC5 (50%)
2 1276 bp 63.79 6.47 90.05
SCNpilot_cont_500_bf_scaffold_63420
Species: Devosia riboflavina (50%)
2 1063 bp 59.55 5.41 92.00
SCNpilot_cont_500_bf_scaffold_77580
Species: Devosia soli (50%)
2 1826 bp 58.54 3.83 49.12
SCNpilot_cont_500_bf_scaffold_61434
Species: Agrobacterium rhizogenes (50%)
2 1097 bp 61.35 3.19 95.99
SCNpilot_cont_500_bf_scaffold_44538
Species: Devosia chinhatensis (100%)
2 1436 bp 67.13 5.05 68.73
SCNpilot_cont_500_bf_scaffold_49914
Species: Devosia riboflavina (50%)
2 1307 bp 60.21 3.63 62.66
SCNpilot_cont_500_bf_scaffold_31471
Species: Devosia geojensis (50%)
2 1893 bp 60.38 5.15 96.51
SCNpilot_cont_500_bf_scaffold_66276
Species: Devosia sp. LC5 (50%)
2 1018 bp 61.69 3.19 100.20
SCNpilot_cont_500_bf_scaffold_44029
Species: Devosia soli (50%)
2 1449 bp 56.45 6.38 64.60
SCNpilot_cont_500_bf_scaffold_18026
Species: Devosia riboflavina (50%)
2 2891 bp 66.03 5.27 100.55
SCNpilot_cont_500_bf_scaffold_54574
Species: Devosia psychrophila (50%)
2 1218 bp 63.38 4.31 85.71
SCNpilot_cont_500_bf_scaffold_41796
Species: Devosia chinhatensis (50%)
2 1511 bp 64.13 3.64 93.71
SCNpilot_cont_500_bf_scaffold_46058
Species: Devosia insulae (50%)
2 1397 bp 62.92 5.73 99.00
SCNpilot_cont_500_bf_scaffold_42192
Species: Desulfobacter postgatei (50%)
2 1498 bp 62.35 3.34 91.52
SCNpilot_cont_500_bf_scaffold_29236
Species: Devosia sp. LC5 (50%)
2 2008 bp 61.80 3.86 89.04
SCNpilot_cont_500_bf_scaffold_49160
Species: Devosia psychrophila (50%)
2 1323 bp 64.70 5.10 94.78
SCNpilot_cont_500_bf_scaffold_47232
Species: Devosia insulae (50%)
2 1368 bp 58.85 3.65 56.36
SCNpilot_cont_500_bf_scaffold_61962
Species: Devosia insulae (100%)
2 1088 bp 62.87 5.06 100.37
SCNpilot_cont_500_bf_scaffold_34670
Species: Devosia chinhatensis (50%)
2 1757 bp 59.48 4.55 87.76
SCNpilot_cont_500_bf_scaffold_47234
Species: Devosia insulae (50%)
2 1368 bp 65.28 4.20 98.03
SCNpilot_cont_500_bf_scaffold_53867
Species: Devosia chinhatensis (100%)
2 1231 bp 62.96 4.67 99.43
SCNpilot_cont_500_bf_scaffold_46835
Species: Devosia chinhatensis (50%)
2 2368 bp 62.25 3.17 72.59
SCNpilot_cont_500_bf_scaffold_28656
Species: Devosia soli (100%)
2 2037 bp 65.29 3.80 98.67
SCNpilot_cont_500_bf_scaffold_57013
Species: Devosia riboflavina (50%)
2 1173 bp 65.98 3.84 99.23
SCNpilot_cont_500_bf_scaffold_46837
Species: Microvirga lotononidis (50%)
2 1377 bp 58.82 5.08 98.04
SCNpilot_cont_500_bf_scaffold_49165
Species: Devosia sp. DDB001 (50%)
2 1323 bp 60.24 4.72 89.12
SCNpilot_cont_500_bf_scaffold_33170
Species: Devosia chinhatensis (100%)
2 1818 bp 65.35 3.58 89.77
SCNpilot_cont_500_bf_scaffold_20275
Species: Devosia chinhatensis (50%)
2 2652 bp 62.97 4.62 94.23
SCNpilot_cont_500_bf_scaffold_42715
Species: Devosia insulae (50%)
2 1484 bp 60.18 4.72 85.71
SCNpilot_cont_500_bf_scaffold_58887
Species: Devosia riboflavina (50%)
2 1141 bp 63.01 6.13 92.29
SCNpilot_cont_500_bf_scaffold_33940
Species: Devosia chinhatensis (100%)
2 1786 bp 63.38 4.62 89.70
SCNpilot_cont_500_bf_scaffold_44048
Species: Agrobacterium arsenijevicii (50%)
2 1449 bp 62.59 4.66 96.48
SCNpilot_cont_500_bf_scaffold_52289
Species: Devosia soli (50%)
2 1259 bp 64.26 2.58 87.93
SCNpilot_cont_500_bf_scaffold_35006
Species: Devosia chinhatensis (50%)
2 1743 bp 58.92 4.02 78.83
SCNpilot_cont_500_bf_scaffold_28150
Species: Jannaschia sp. CCS1 (50%)
2 2066 bp 63.36 3.99 93.51
SCNpilot_cont_500_bf_scaffold_44050
Species: Devosia riboflavina (50%)
2 1449 bp 63.01 3.28 88.61
SCNpilot_cont_500_bf_scaffold_53107
Species: Devosia chinhatensis (100%)
2 1245 bp 61.04 2.61 84.10
SCNpilot_cont_500_bf_scaffold_20535
Species: Afipia clevelandensis (100%)
2 2626 bp 63.06 3.90 96.08
SCNpilot_cont_500_bf_scaffold_42207
Species: Devosia riboflavina (50%)
2 1498 bp 64.82 4.51 100.13
SCNpilot_cont_500_bf_scaffold_56180
Species: Devosia chinhatensis (100%)
2 1188 bp 63.47 3.37 87.63
SCNpilot_cont_500_bf_scaffold_37569
Species: Devosia riboflavina (50%)
2 1646 bp 60.63 3.80 92.22
SCNpilot_cont_500_bf_scaffold_27987
Species: R_Alphaproteobacteria_40_19 (50%)
2 2075 bp 60.19 4.34 81.54
SCNpilot_cont_500_bf_scaffold_51479
Species: Devosia sp. LC5 (100%)
2 1276 bp 65.52 2.94 100.16
Displaying items 651-700 of 941 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.