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SCNPILOT_EXPT_750_P_Devosia_62_26

SCNPILOT_CONT_500_BF_Devosia_63_4
In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy: Devosia  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 4.28 Longest contig: 9.96 Kbp Bin length: 2.04 Mbp GC content: 62.71 %
Contigs count: 941 Features count: 2775 rRNAs count: 0 tRNAs count: 15

Genome completeness

partial RP 29 / 55 MC: 1 BSCG 32 / 51 MC: 2 ASCG 9 / 38
Displaying items 751-800 of 941 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_37860
Species: Devosia psychrophila (50%)
2 1635 bp 62.45 3.67 99.82
SCNpilot_cont_500_bf_scaffold_29028
Species: Devosia soli (50%)
2 2018 bp 64.02 3.84 94.70
SCNpilot_cont_500_bf_scaffold_48064
Species: Pirellula staleyi (50%)
2 1347 bp 62.51 3.71 97.55
SCNpilot_cont_500_bf_scaffold_60605
Species: Devosia chinhatensis (100%)
2 1111 bp 63.01 2.93 90.19
SCNpilot_cont_500_bf_scaffold_57570
Species: Devosia limi (50%)
2 1163 bp 62.25 3.01 89.77
SCNpilot_cont_500_bf_scaffold_56475
Species: Devosia sp. LC5 (50%)
2 1182 bp 65.14 4.44 97.97
SCNpilot_cont_500_bf_scaffold_40881
Species: Devosia soli (100%)
2 1539 bp 62.05 3.09 80.12
SCNpilot_cont_500_bf_scaffold_52333
Species: Devosia psychrophila (50%)
2 1259 bp 61.24 3.77 94.12
SCNpilot_cont_500_bf_scaffold_30682
Species: Devosia riboflavina (50%)
2 1930 bp 60.57 4.02 96.37
SCNpilot_cont_500_bf_scaffold_39484
Species: Devosia chinhatensis (100%)
2 1581 bp 62.24 4.74 80.46
SCNpilot_cont_500_bf_scaffold_45568
Species: Devosia chinhatensis (100%)
2 1408 bp 61.51 3.73 96.95
SCNpilot_cont_500_bf_scaffold_47033
Species: Devosia limi (50%)
2 1373 bp 66.79 3.64 88.71
SCNpilot_cont_500_bf_scaffold_45058
Species: Devosia sp. LC5 (50%)
2 1422 bp 57.24 4.57 87.34
SCNpilot_cont_500_bf_scaffold_40887
Species: Devosia limi (100%)
2 1539 bp 61.92 4.06 96.30
SCNpilot_cont_500_bf_scaffold_61508
Species: Devosia insulae (50%)
2 1096 bp 63.32 3.65 73.63
SCNpilot_cont_500_bf_scaffold_31288
Species: Devosia chinhatensis (50%)
2 1902 bp 65.19 3.15 77.29
SCNpilot_cont_500_bf_scaffold_44868
Species: Salipiger mucosus (100%)
2 1427 bp 67.62 3.50 100.07
SCNpilot_cont_500_bf_scaffold_49220
Species: Devosia chinhatensis (50%)
2 1322 bp 62.10 5.48 95.54
SCNpilot_cont_500_bf_scaffold_26849
Species: Devosia riboflavina (50%)
2 2144 bp 66.79 3.96 96.41
SCNpilot_cont_500_bf_scaffold_40377
Species: Devosia epidermidihirudinis (50%)
2 1553 bp 66.77 5.47 93.69
SCNpilot_cont_500_bf_scaffold_62207
Species: Devosia limi (50%)
2 1084 bp 65.68 3.23 91.88
SCNpilot_cont_500_bf_scaffold_25499
Species: Devosia psychrophila (50%)
2 2230 bp 64.44 4.04 96.59
SCNpilot_cont_500_bf_scaffold_47295
Species: Devosia soli (50%)
2 1366 bp 61.57 3.29 66.54
SCNpilot_cont_500_bf_scaffold_40636
Species: Devosia chinhatensis (100%)
2 1546 bp 63.00 3.72 92.56
SCNpilot_cont_500_bf_scaffold_63504
Species: Devosia riboflavina (50%)
2 1062 bp 61.86 3.53 104.80
SCNpilot_cont_500_bf_scaffold_66097
Species: Devosia riboflavina (50%)
2 1021 bp 65.13 2.45 97.26
SCNpilot_cont_500_bf_scaffold_36678
Species: Devosia soli (50%)
2 1678 bp 65.14 3.87 93.68
SCNpilot_cont_500_bf_scaffold_27782
Species: Devosia soli (50%)
2 2088 bp 61.02 4.19 81.32
SCNpilot_cont_500_bf_scaffold_47554
Species: Devosia riboflavina (50%)
2 1359 bp 60.78 4.42 89.40
SCNpilot_cont_500_bf_scaffold_45323
Species: Devosia chinhatensis (50%)
2 1414 bp 64.92 3.54 103.75
SCNpilot_cont_500_bf_scaffold_42776
Species: Skermanella aerolata (50%)
2 1482 bp 62.55 3.37 83.20
SCNpilot_cont_500_bf_scaffold_46389
Species: Devosia chinhatensis (50%)
2 1389 bp 60.76 5.40 77.97
SCNpilot_cont_500_bf_scaffold_63765
Species: Devosia chinhatensis (50%)
2 1057 bp 56.76 3.78 79.19
SCNpilot_cont_500_bf_scaffold_52861
Species: Agrobacterium tumefaciens (50%)
2 1249 bp 64.45 4.20 91.51
SCNpilot_cont_500_bf_scaffold_19546
Species: Haematobacter missouriensis (50%)
2 2720 bp 60.66 5.51 90.11
SCNpilot_cont_500_bf_scaffold_93465
Species: Devosia chinhatensis (50%)
2 1356 bp 58.55 4.06 52.21
SCNpilot_cont_500_bf_scaffold_36683
Species: Devosia riboflavina (100%)
2 1678 bp 65.32 3.87 92.79
SCNpilot_cont_500_bf_scaffold_46135
Species: Devosia chinhatensis (50%)
2 1395 bp 58.28 4.84 86.67
SCNpilot_cont_500_bf_scaffold_65576
Species: Devosia chinhatensis (50%)
2 1028 bp 61.28 2.92 79.09
SCNpilot_cont_500_bf_scaffold_62473
Species: Devosia riboflavina (50%)
2 1079 bp 59.50 4.17 99.54
SCNpilot_cont_500_bf_scaffold_26605
Species: Devosia riboflavina (50%)
2 2160 bp 63.06 3.70 100.00
SCNpilot_cont_500_bf_scaffold_32663
Species: Devosia soli (50%)
2 2706 bp 63.86 4.71 79.93
SCNpilot_cont_500_bf_scaffold_54915
Species: Devosia chinhatensis (100%)
2 1212 bp 60.73 4.54 90.10
SCNpilot_cont_500_bf_scaffold_56756
Species: Devosia chinhatensis (100%)
2 1177 bp 64.15 7.22 86.66
SCNpilot_cont_500_bf_scaffold_25257
Species: Devosia soli (50%)
2 2245 bp 61.69 4.79 86.06
SCNpilot_cont_500_bf_scaffold_22642
Species: Devosia sp. LC5 (50%)
2 2439 bp 64.66 4.10 90.77
SCNpilot_cont_500_bf_scaffold_36691
Species: Devosia chinhatensis (100%)
2 1678 bp 65.14 4.92 82.96
SCNpilot_cont_500_bf_scaffold_20862
Species: Devosia geojensis (50%)
2 2597 bp 62.61 4.52 91.37
SCNpilot_cont_500_bf_scaffold_46402
Species: Devosia limi (50%)
2 1388 bp 65.92 5.76 86.24
SCNpilot_cont_500_bf_scaffold_50476
Species: Devosia chinhatensis (50%)
2 1296 bp 61.27 3.47 88.19
Displaying items 751-800 of 941 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.