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SCNPILOT_EXPT_750_BF_Myxococcales_68_20

SCNPILOT_CONT_500_BF_Deltaproteobacteria_69_4
In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 3.96 Longest contig: 11.59 Kbp Bin length: 5.04 Mbp GC content: 68.68 %
Contigs count: 2420 Features count: 6126 rRNAs count: 0 tRNAs count: 13

Genome completeness

partial RP 28 / 55 MC: 2 BSCG 23 / 51 MC: 3 ASCG 5 / 38
Displaying items 2301-2350 of 2420 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_63992
Species: Sorangium cellulosum (50%)
2 1054 bp 67.55 2.85 100.19
SCNpilot_cont_500_bf_scaffold_39981
Species: Corallococcus coralloides (50%)
2 1566 bp 72.80 3.67 100.19
SCNpilot_cont_500_bf_scaffold_28414
Species: Haliangium ochraceum (50%)
2 2051 bp 70.79 3.41 100.20
SCNpilot_cont_500_bf_scaffold_41187
Species: RBG_13_Chloroflexi_53_26_curated (50%)
2 1530 bp 68.43 2.61 100.20
SCNpilot_cont_500_bf_scaffold_41763
Species: Thioploca ingrica (50%)
2 1512 bp 69.38 3.47 100.20
SCNpilot_cont_500_bf_scaffold_82945
Species: Sandaracinus amylolyticus (100%)
2 1494 bp 68.21 3.85 100.20
SCNpilot_cont_500_bf_scaffold_26574
Species: Sorangium cellulosum (66.67%)
3 3293 bp 73.22 4.48 100.21
SCNpilot_cont_500_bf_scaffold_31876
Species: Chloroflexus aggregans (50%)
2 1874 bp 68.46 4.27 100.21
SCNpilot_cont_500_bf_scaffold_19230
Species: Chondromyces apiculatus (66.67%)
3 2757 bp 70.80 3.63 100.22
SCNpilot_cont_500_bf_scaffold_47818
Species: uncultured bacterium A1Q1_fos_1807 (50%)
2 1353 bp 66.30 5.91 100.22
SCNpilot_cont_500_bf_scaffold_48306
Species: Chondromyces apiculatus (50%)
2 1341 bp 67.93 4.10 100.22
SCNpilot_cont_500_bf_scaffold_48593
Species: Verrucomicrobia bacterium IMCC26134 (50%)
2 1335 bp 68.99 3.93 100.23
SCNpilot_cont_500_bf_scaffold_48994
Species: Sandaracinus amylolyticus (50%)
2 1326 bp 64.33 3.77 100.23
SCNpilot_cont_500_bf_scaffold_50313
Species: Sorangium cellulosum (50%)
2 1299 bp 71.29 3.27 100.23
SCNpilot_cont_500_bf_scaffold_36171
Species: Thioploca ingrica (50%)
2 1697 bp 68.59 4.42 100.24
SCNpilot_cont_500_bf_scaffold_17446
Species: Sorangium cellulosum (50%)
4 2960 bp 68.92 2.96 100.24
SCNpilot_cont_500_bf_scaffold_21598 3 2532 bp 63.51 4.25 100.24
SCNpilot_cont_500_bf_scaffold_52438
Species: Arthrobacter crystallopoietes (50%)
2 1257 bp 69.13 3.58 100.24
SCNpilot_cont_500_bf_scaffold_53615
Species: Sorangium cellulosum (50%)
2 1236 bp 73.87 4.05 100.24
SCNpilot_cont_500_bf_scaffold_14769
Domain: Bacteria (100%)
5 4022 bp 71.88 3.67 100.25
SCNpilot_cont_500_bf_scaffold_38674
Species: Myxococcus sp. (contaminant ex DSM 436) (50%)
2 1607 bp 70.26 3.42 100.25
SCNpilot_cont_500_bf_scaffold_38825
Species: Sorangium cellulosum (66.67%)
3 1601 bp 68.64 3.44 100.25
SCNpilot_cont_500_bf_scaffold_30012 3 1966 bp 70.04 4.58 100.25
SCNpilot_cont_500_bf_scaffold_39890
Species: Myxococcus stipitatus (50%)
2 1568 bp 64.92 4.46 100.26
SCNpilot_cont_500_bf_scaffold_39921
Species: Chondromyces apiculatus (50%)
2 1568 bp 68.11 3.19 100.26
SCNpilot_cont_500_bf_scaffold_57035
Species: Myxococcus xanthus (100%)
2 1173 bp 61.98 3.84 100.26
SCNpilot_cont_500_bf_scaffold_60827
Order: Myxococcales (66.67%)
3 1107 bp 68.20 3.61 100.27
SCNpilot_cont_500_bf_scaffold_61917
Species: Roseiflexus castenholzii (50%)
2 1089 bp 66.67 3.90 100.28
SCNpilot_cont_500_bf_scaffold_62649
Species: Sorangium cellulosum (100%)
2 1077 bp 69.92 5.80 100.28
SCNpilot_cont_500_bf_scaffold_64044
Species: Sandaracinus amylolyticus (50%)
2 1053 bp 65.91 3.56 100.29
SCNpilot_cont_500_bf_scaffold_46048 3 1397 bp 70.37 3.04 100.29
SCNpilot_cont_500_bf_scaffold_66336
Species: Haliangium ochraceum (50%)
2 1017 bp 69.32 4.67 100.30
SCNpilot_cont_500_bf_scaffold_66887
Species: RBG_13_Chloroflexi_54_8_curated (50%)
2 1008 bp 68.95 3.22 100.30
SCNpilot_cont_500_bf_scaffold_14683 5 3356 bp 69.93 4.77 100.30
SCNpilot_cont_500_bf_scaffold_29805
Species: RBG_16_Anaeromyxobacter_69_14_curated (50%)
2 1977 bp 70.66 3.92 100.30
SCNpilot_cont_500_bf_scaffold_49911
Species: Corallococcus coralloides (50%)
2 1307 bp 70.70 4.21 100.31
SCNpilot_cont_500_bf_scaffold_30305
Species: Sorangium cellulosum (50%)
4 1950 bp 69.38 3.85 100.31
SCNpilot_cont_500_bf_scaffold_20835
Order: Myxococcales (66.67%)
3 2599 bp 67.53 4.04 100.31
SCNpilot_cont_500_bf_scaffold_25487
Species: Chondromyces apiculatus (50%)
4 2231 bp 69.34 4.03 100.31
SCNpilot_cont_500_bf_scaffold_52330
Species: Sandaracinus amylolyticus (50%)
2 1259 bp 71.88 4.96 100.32
SCNpilot_cont_500_bf_scaffold_52665
Species: Sorangium cellulosum (50%)
2 1253 bp 67.84 2.99 100.32
SCNpilot_cont_500_bf_scaffold_28136
Order: Myxococcales (100%)
3 2066 bp 73.67 4.48 100.34
SCNpilot_cont_500_bf_scaffold_28578
Order: Myxococcales (66.67%)
3 2042 bp 68.85 3.06 100.34
SCNpilot_cont_500_bf_scaffold_59115
Species: Sorangium cellulosum (66.67%)
3 1136 bp 66.64 3.30 100.35
SCNpilot_cont_500_bf_scaffold_25261 3 2245 bp 71.45 6.68 100.36
SCNpilot_cont_500_bf_scaffold_30946
Domain: Bacteria (66.67%)
3 1916 bp 72.60 3.52 100.37
SCNpilot_cont_500_bf_scaffold_31934
Order: Myxococcales (66.67%)
3 1871 bp 69.11 3.87 100.37
SCNpilot_cont_500_bf_scaffold_51296
Order: Myxococcales (66.67%)
3 1279 bp 69.35 2.35 100.39
SCNpilot_cont_500_bf_scaffold_48065
Species: Chondromyces apiculatus (66.67%)
3 1957 bp 68.42 3.58 100.41
SCNpilot_cont_500_bf_scaffold_54989 3 1210 bp 63.80 3.51 100.41
Displaying items 2301-2350 of 2420 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.