ggKbase | organisms

Consensus taxonomy: Planctomycetes → Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 3.86 Longest contig: 7.97 Kbp Bin length: 1.33 Mbp GC content: 71.00 %

Contigs count: 841 Features count: 1741 rRNAs count: 0 tRNAs count: 3

Genome completeness

partial RP 8 / 55 BSCG 5 / 51 ASCG 3 / 38

Displaying items 201-250 of 841 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_cont_500_bf_scaffold_26388 Species: Singulisphaera acidiphila (50%)	2	2172 bp	75.00	3.80	94.48
SCNpilot_cont_500_bf_scaffold_29092 Species: Singulisphaera acidiphila (100%)	2	2015 bp	70.72	3.47	93.35
SCNpilot_cont_500_bf_scaffold_40685 Species: Singulisphaera acidiphila (50%)	2	1544 bp	74.35	4.86	100.07
SCNpilot_cont_500_bf_scaffold_49529 Species: Singulisphaera acidiphila (50%)	2	1315 bp	73.23	3.61	97.19
SCNpilot_cont_500_bf_scaffold_76166 Species: Singulisphaera acidiphila (100%)	2	1583 bp	68.98	3.63	54.77
SCNpilot_cont_500_bf_scaffold_47090 Species: Singulisphaera acidiphila (100%)	2	1372 bp	72.67	3.10	94.02
SCNpilot_cont_500_bf_scaffold_47346 Species: Isosphaera pallida (50%)	2	1365 bp	72.38	3.11	92.75
SCNpilot_cont_500_bf_scaffold_52650 Species: Isosphaera pallida (50%)	2	1253 bp	73.90	2.79	92.90
SCNpilot_cont_500_bf_scaffold_54188 Species: Singulisphaera acidiphila (50%)	2	1226 bp	69.25	3.06	71.45
SCNpilot_cont_500_bf_scaffold_48389 Species: Singulisphaera acidiphila (50%)	2	1339 bp	71.99	5.60	75.73
SCNpilot_cont_500_bf_scaffold_23970 Species: Singulisphaera acidiphila (50%)	2	2338 bp	73.18	4.38	99.32
SCNpilot_cont_500_bf_scaffold_24693 Species: Singulisphaera acidiphila (100%)	2	2285 bp	68.71	3.94	84.55
SCNpilot_cont_500_bf_scaffold_64425 Species: Thioploca ingrica (50%)	2	1046 bp	72.47	3.82	78.59
SCNpilot_cont_500_bf_scaffold_35118 Species: Candidatus Solibacter usitatus (50%)	2	1739 bp	69.41	4.89	78.67
SCNpilot_cont_500_bf_scaffold_44674 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	1432 bp	78.21	3.67	99.09
SCNpilot_cont_500_bf_scaffold_34536 Species: Singulisphaera acidiphila (50%)	2	1762 bp	71.17	4.11	92.96
SCNpilot_cont_500_bf_scaffold_56293 Species: Singulisphaera acidiphila (50%)	2	1186 bp	72.77	3.79	80.94
SCNpilot_cont_500_bf_scaffold_55725 Species: Singulisphaera acidiphila (50%)	2	1196 bp	69.15	3.14	89.80
SCNpilot_cont_500_bf_scaffold_64941 Species: Isosphaera pallida (50%)	2	1038 bp	78.90	2.65	99.71
SCNpilot_cont_500_bf_scaffold_56294 Species: Singulisphaera acidiphila (50%)	2	1186 bp	76.98	3.16	83.47
SCNpilot_cont_500_bf_scaffold_63822 Species: Singulisphaera acidiphila (100%)	2	1830 bp	77.92	4.37	100.49
SCNpilot_cont_500_bf_scaffold_43899 Species: Sandaracinus amylolyticus (50%)	2	1452 bp	72.93	4.30	77.07
SCNpilot_cont_500_bf_scaffold_38411 Species: Singulisphaera acidiphila (50%)	2	1615 bp	69.10	3.10	83.03
SCNpilot_cont_500_bf_scaffold_39811 Species: Singulisphaera acidiphila (50%)	2	2263 bp	74.19	4.09	61.78
SCNpilot_cont_500_bf_scaffold_31356 Species: Singulisphaera acidiphila (50%)	2	1898 bp	68.97	3.03	90.57
SCNpilot_cont_500_bf_scaffold_36740 Species: Desulfobulbus sp. Tol-SR (50%)	2	1676 bp	73.99	4.77	90.93
SCNpilot_cont_500_bf_scaffold_48656 Species: Singulisphaera acidiphila (50%)	2	1333 bp	73.07	2.44	85.07
SCNpilot_cont_500_bf_scaffold_48912 Species: Singulisphaera acidiphila (100%)	2	1895 bp	72.98	4.49	96.25
SCNpilot_cont_500_bf_scaffold_57394 Species: Singulisphaera acidiphila (50%)	2	1166 bp	68.70	4.93	99.31
SCNpilot_cont_500_bf_scaffold_66930 Species: Magnetococcus marinus (50%)	2	1008 bp	62.90	3.22	73.81
SCNpilot_cont_500_bf_scaffold_49290 Species: Isosphaera pallida (50%)	2	1320 bp	69.77	3.79	47.27
SCNpilot_cont_500_bf_scaffold_61579	2	1094 bp	48.26	2.51	100.37
SCNpilot_cont_500_bf_scaffold_63315 Species: Singulisphaera acidiphila (50%)	2	1065 bp	70.33	3.76	69.86
SCNpilot_cont_500_bf_scaffold_38673 Species: Singulisphaera acidiphila (100%)	2	1607 bp	72.62	2.80	97.82
SCNpilot_cont_500_bf_scaffold_44429 Species: Singulisphaera acidiphila (100%)	2	1438 bp	73.64	5.22	98.47
SCNpilot_cont_500_bf_scaffold_43138 Species: Isosphaera pallida (50%)	2	1472 bp	66.85	2.21	98.03
SCNpilot_cont_500_bf_scaffold_17770 Species: Singulisphaera acidiphila (50%)	2	2922 bp	68.21	5.82	93.84
SCNpilot_cont_500_bf_scaffold_41170 Species: marine sediment metagenome (50%)	2	1530 bp	69.02	3.59	92.35
SCNpilot_cont_500_bf_scaffold_51342 Species: Sandaracinus amylolyticus (50%)	2	1278 bp	72.61	3.52	62.44
SCNpilot_cont_500_bf_scaffold_60180 Species: Singulisphaera acidiphila (100%)	2	1118 bp	71.20	2.91	92.04
SCNpilot_cont_500_bf_scaffold_50784 Species: marine sediment metagenome (50%)	2	1289 bp	72.38	3.30	98.91
SCNpilot_cont_500_bf_scaffold_56817 Species: Singulisphaera acidiphila (50%)	2	1176 bp	70.92	2.98	100.00
SCNpilot_cont_500_bf_scaffold_61585	2	1094 bp	75.23	3.66	96.53
SCNpilot_cont_500_bf_scaffold_60950 Species: Burkholderiales bacterium GJ-E10 (50%)	2	1105 bp	71.58	2.49	83.89
SCNpilot_cont_500_bf_scaffold_56819 Species: Singulisphaera acidiphila (50%)	2	1176 bp	74.66	3.19	96.68
SCNpilot_cont_500_bf_scaffold_35391 Species: Singulisphaera acidiphila (100%)	2	1727 bp	65.84	3.18	39.43
SCNpilot_cont_500_bf_scaffold_65643	2	1027 bp	72.25	4.63	61.64
SCNpilot_cont_500_bf_scaffold_55483 Species: marine sediment metagenome (50%)	2	1201 bp	67.36	3.75	92.17
SCNpilot_cont_500_bf_scaffold_57404 Species: Singulisphaera acidiphila (100%)	2	1166 bp	72.30	3.64	98.28
SCNpilot_cont_500_bf_scaffold_23224 Species: R_Acidobacteria_61_28 (50%)	2	2393 bp	74.93	3.13	86.75

Displaying items 201-250 of 841 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNpilot_P_inoc_Planctomycetales_70_10) and add all its contigs / scaffolds to the organism you choose below

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Other organism

SCNpilot_P_inoc_Planctomycetales_70_10

SCNPILOT_CONT_500_BF_Planctomycetes_71_4

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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