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SCNPILOT_CONT_500_P_Alphaproteobacteria_novel_41_6_7

SCNPILOT_CONT_500_BF_Bacteria_39_4
In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 3.54 Longest contig: 4.19 Kbp Bin length: 396.99 Kbp GC content: 39.32 %
Contigs count: 271 Features count: 559 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 3 / 55 MC: 1 BSCG 8 / 51 MC: 2 ASCG 2 / 38
Displaying items 51-100 of 271 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_56187
Domain: Bacteria (66.67%)
3 1188 bp 42.59 4.00 79.80
SCNpilot_cont_500_bf_scaffold_27485 3 2106 bp 33.71 2.85 62.82
SCNpilot_cont_500_bf_scaffold_33455
Domain: Bacteria (66.67%)
3 1805 bp 34.13 4.85 63.82
SCNpilot_cont_500_bf_scaffold_34194
Class: Gammaproteobacteria (66.67%)
3 1776 bp 40.48 2.82 92.57
SCNpilot_cont_500_bf_scaffold_53143
Species: R_Alphaproteobacteria_42_30 (66.67%)
3 1244 bp 41.88 2.41 55.95
SCNpilot_cont_500_bf_scaffold_46879
Domain: Bacteria (66.67%)
3 2140 bp 37.62 2.80 59.72
SCNpilot_cont_500_bf_scaffold_39222 3 1589 bp 40.78 2.52 59.09
SCNpilot_cont_500_bf_scaffold_37353
Species: Legionella massiliensis (66.67%)
3 1654 bp 43.59 6.50 102.66
SCNpilot_cont_500_bf_scaffold_27008 3 2134 bp 36.97 3.05 76.90
SCNpilot_cont_500_bf_scaffold_35575
Domain: Bacteria (66.67%)
3 1720 bp 39.42 4.36 73.78
SCNpilot_cont_500_bf_scaffold_26344
Class: Alphaproteobacteria (66.67%)
3 2175 bp 30.80 3.10 62.76
SCNpilot_cont_500_bf_scaffold_52353 3 1258 bp 31.24 2.38 54.61
SCNpilot_cont_500_bf_scaffold_58444 3 1148 bp 33.54 3.48 63.50
SCNpilot_cont_500_bf_scaffold_32665 3 1840 bp 37.12 3.13 76.79
SCNpilot_cont_500_bf_scaffold_38879 3 1600 bp 34.75 3.13 78.75
SCNpilot_cont_500_bf_scaffold_56519 3 1181 bp 33.87 3.18 104.40
SCNpilot_cont_500_bf_scaffold_59594
Class: Alphaproteobacteria (66.67%)
3 1770 bp 38.02 3.11 90.85
SCNpilot_cont_500_bf_scaffold_35874
Species: Cupriavidus sp. SK-3 (50%)
2 1707 bp 40.19 3.51 67.31
SCNpilot_cont_500_bf_scaffold_61816
Species: uncultured bacterium (50%)
2 1090 bp 45.41 1.83 89.72
SCNpilot_cont_500_bf_scaffold_66913
Species: Fischerella sp. JSC-11 (50%)
2 1008 bp 38.19 3.47 67.86
SCNpilot_cont_500_bf_scaffold_21478
Species: Flammeovirgaceae bacterium 311 (50%)
2 2544 bp 35.38 3.54 67.10
SCNpilot_cont_500_bf_scaffold_53471
Species: uncultured bacterium (100%)
2 1239 bp 35.43 2.82 51.82
SCNpilot_cont_500_bf_scaffold_50256
Species: RifOxyA12_full_Proteobacteria_58_15_curated (50%)
2 1300 bp 35.54 2.88 42.46
SCNpilot_cont_500_bf_scaffold_20904
Species: Wolbachia endosymbiont of Drosophila simulans (50%)
2 2594 bp 44.26 7.71 89.98
SCNpilot_cont_500_bf_scaffold_46703
Species: Candidatus Paracaedibacter acanthamoebae (50%)
2 2677 bp 40.16 3.74 97.72
SCNpilot_cont_500_bf_scaffold_56296
Species: Bradyrhizobium sp. DFCI-1 (50%)
2 1186 bp 48.57 36.68 94.60
SCNpilot_cont_500_bf_scaffold_46704
Species: Endozoicomonas montiporae (50%)
2 1381 bp 42.43 9.78 78.20
SCNpilot_cont_500_bf_scaffold_55475
Species: R_Alphaproteobacteria_42_30 (50%)
2 1201 bp 45.88 2.91 99.92
SCNpilot_cont_500_bf_scaffold_66166
Species: R_Alphaproteobacteria_42_30 (50%)
2 1020 bp 37.35 2.45 64.41
SCNpilot_cont_500_bf_scaffold_62792
Species: R_Alphaproteobacteria_42_30 (50%)
2 1074 bp 39.94 2.33 75.70
SCNpilot_cont_500_bf_scaffold_31879
Species: uncultured bacterium (50%)
2 1873 bp 40.15 3.74 98.34
SCNpilot_cont_500_bf_scaffold_51091
Species: uncultured bacterium (50%)
2 1283 bp 33.44 3.90 83.01
SCNpilot_cont_500_bf_scaffold_79636
Species: uncultured bacterium (100%)
2 1503 bp 44.78 3.83 57.88
SCNpilot_cont_500_bf_scaffold_32987
Species: Erwinia amylovora (50%)
2 1825 bp 35.62 2.47 75.95
SCNpilot_cont_500_bf_scaffold_60446
Species: uncultured bacterium (50%)
2 1114 bp 43.63 3.14 100.18
SCNpilot_cont_500_bf_scaffold_61600
Species: Candidatus Caedibacter acanthamoebae (50%)
2 1094 bp 39.21 2.74 92.14
SCNpilot_cont_500_bf_scaffold_28548
Species: R_Alphaproteobacteria_42_30 (50%)
2 2043 bp 35.68 2.94 45.52
SCNpilot_cont_500_bf_scaffold_49824
Species: uncultured bacterium (50%)
2 1309 bp 39.57 2.48 57.75
SCNpilot_cont_500_bf_scaffold_53762
Species: uncultured bacterium (50%)
2 1233 bp 41.20 2.43 95.86
SCNpilot_cont_500_bf_scaffold_51362
Species: Rickettsiales bacterium SCGC AAA041-L04 (100%)
2 2042 bp 45.94 2.82 89.62
SCNpilot_cont_500_bf_scaffold_63851
Species: Legionella pneumophila (50%)
2 1056 bp 43.09 4.26 97.73
SCNpilot_cont_500_bf_scaffold_48174
Species: uncultured bacterium (50%)
2 1345 bp 46.47 2.60 100.15
SCNpilot_cont_500_bf_scaffold_61095
Species: uncultured bacterium (50%)
2 1103 bp 46.60 3.63 101.18
SCNpilot_cont_500_bf_scaffold_34315
Species: Candidatus Paracaedibacter acanthamoebae (50%)
2 1771 bp 34.44 3.67 78.09
SCNpilot_cont_500_bf_scaffold_65151
Species: Mycobacterium xenopi (50%)
2 1035 bp 39.32 4.35 104.64
SCNpilot_cont_500_bf_scaffold_65920
Species: uncultured bacterium (50%)
2 1023 bp 33.04 2.69 64.52
SCNpilot_cont_500_bf_scaffold_51884
Species: Streptoalloteichus hindustanus (50%)
2 1268 bp 40.93 2.37 46.85
SCNpilot_cont_500_bf_scaffold_50301
Species: uncultured bacterium (50%)
2 1299 bp 42.49 3.08 79.91
SCNpilot_cont_500_bf_scaffold_32754
Species: Rhodobacteraceae bacterium HTCC2150 (50%)
2 1836 bp 37.58 3.54 94.28
SCNpilot_cont_500_bf_scaffold_62830 2 1073 bp 39.98 3.03 82.76
Displaying items 51-100 of 271 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.