ggKbase home page
Advanced Search
Search Help

SCNpilot_P_inoc_Niastella_42_33

SCNPILOT_CONT_500_BF_Sphingobacteriales_43_3
In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 3.22 Longest contig: 4.71 Kbp Bin length: 906.90 Kbp GC content: 43.09 %
Contigs count: 609 Features count: 1223 rRNAs count: 0 tRNAs count: 3

Genome completeness

partial RP 11 / 55 BSCG 15 / 51 ASCG 3 / 38
Displaying items 151-200 of 609 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_44932
Species: Fibrisoma limi (50%)
2 1425 bp 44.56 3.51 92.42
SCNpilot_cont_500_bf_scaffold_59621
Species: Chitinophaga pinensis (50%)
2 1127 bp 44.54 2.66 100.35
SCNpilot_cont_500_bf_scaffold_60937
Species: Pontibacter sp. BAB1700 (50%)
2 1105 bp 41.27 3.62 88.78
SCNpilot_cont_500_bf_scaffold_46957 2 1946 bp 45.07 3.85 100.05
SCNpilot_cont_500_bf_scaffold_37426
Species: Niastella koreensis (100%)
2 1651 bp 42.34 4.09 91.04
SCNpilot_cont_500_bf_scaffold_46702
Species: Flavihumibacter petaseus (50%)
2 1381 bp 47.94 2.53 100.15
SCNpilot_cont_500_bf_scaffold_58750
Species: Flavobacterium sp. EM1308 (50%)
2 1143 bp 44.88 2.41 89.50
SCNpilot_cont_500_bf_scaffold_54454
Species: Niastella koreensis (50%)
2 1221 bp 46.85 2.66 92.87
SCNpilot_cont_500_bf_scaffold_48911
Species: Niastella koreensis (50%)
2 1328 bp 44.05 3.39 94.20
SCNpilot_cont_500_bf_scaffold_66672
Species: R_Fluviicola_43_260 (50%)
2 1012 bp 40.12 3.21 65.51
SCNpilot_cont_500_bf_scaffold_37684
Species: Flavobacterium beibuense (50%)
2 1642 bp 46.22 5.02 99.94
SCNpilot_cont_500_bf_scaffold_27076
Species: Niastella koreensis (50%)
2 2130 bp 44.84 3.29 91.55
SCNpilot_cont_500_bf_scaffold_63568
Species: Flavobacteriales bacterium ALC-1 (50%)
2 1061 bp 44.58 2.83 96.98
SCNpilot_cont_500_bf_scaffold_42581
Species: Dyadobacter fermentans (50%)
2 1488 bp 40.66 3.86 100.20
SCNpilot_cont_500_bf_scaffold_23469
Species: Flavihumibacter petaseus (50%)
2 2374 bp 45.66 2.84 92.38
SCNpilot_cont_500_bf_scaffold_52922
Species: Flavihumibacter petaseus (50%)
2 1248 bp 45.11 4.81 92.55
SCNpilot_cont_500_bf_scaffold_53995
Species: Mucilaginibacter paludis (50%)
2 1229 bp 46.87 2.24 92.51
SCNpilot_cont_500_bf_scaffold_37943
Species: Mucilaginibacter paludis (100%)
2 1631 bp 38.75 2.45 89.39
SCNpilot_cont_500_bf_scaffold_38159
Species: Niastella koreensis (50%)
2 1624 bp 44.83 2.46 89.59
SCNpilot_cont_500_bf_scaffold_40705
Species: Niabella soli (50%)
2 1544 bp 44.24 2.59 90.54
SCNpilot_cont_500_bf_scaffold_51085
Species: Niastella koreensis (50%)
2 1283 bp 32.58 2.92 88.62
SCNpilot_cont_500_bf_scaffold_52413
Species: Niastella koreensis (50%)
2 1257 bp 44.63 2.98 71.84
SCNpilot_cont_500_bf_scaffold_52925
Species: Flavihumibacter solisilvae (100%)
2 1248 bp 44.47 4.01 84.38
SCNpilot_cont_500_bf_scaffold_44945
Species: Niastella koreensis (50%)
2 1425 bp 45.47 2.81 89.26
SCNpilot_cont_500_bf_scaffold_54209
Species: Leptospira sp. B5-022 (50%)
2 1225 bp 42.78 4.49 88.41
SCNpilot_cont_500_bf_scaffold_56051
Species: Solitalea canadensis (100%)
2 1190 bp 42.27 2.31 88.99
SCNpilot_cont_500_bf_scaffold_43656
Species: Niabella soli (50%)
2 1459 bp 45.03 2.91 98.70
SCNpilot_cont_500_bf_scaffold_32472
Species: Chitinophaga pinensis (50%)
2 1848 bp 43.99 3.11 99.35
SCNpilot_cont_500_bf_scaffold_36752
Species: Chryseobacterium indologenes (50%)
2 1675 bp 33.85 3.88 80.42
SCNpilot_cont_500_bf_scaffold_63580
Species: Indibacter alkaliphilus (50%)
2 1061 bp 42.22 3.06 65.60
SCNpilot_cont_500_bf_scaffold_64957
Species: Niabella soli (50%)
2 1038 bp 43.93 5.06 76.88
SCNpilot_cont_500_bf_scaffold_66942
Species: Flavobacterium sp. F52 (50%)
2 1008 bp 39.88 4.46 97.02
SCNpilot_cont_500_bf_scaffold_42082
Species: Chitinophaga pinensis (50%)
2 1502 bp 42.88 2.66 90.48
SCNpilot_cont_500_bf_scaffold_35139
Species: Pontibacter korlensis (50%)
2 1738 bp 39.24 3.16 100.12
SCNpilot_cont_500_bf_scaffold_30003
Species: Flavihumibacter petaseus (50%)
2 1967 bp 43.92 3.81 64.67
SCNpilot_cont_500_bf_scaffold_55488
Species: Flammeovirgaceae bacterium 311 (50%)
2 1201 bp 45.96 2.29 95.67
SCNpilot_cont_500_bf_scaffold_31629
Species: Flavihumibacter solisilvae (50%)
2 1885 bp 45.84 3.71 93.26
SCNpilot_cont_500_bf_scaffold_65649
Species: Bacteroides ovatus (50%)
2 1027 bp 42.84 3.16 100.20
SCNpilot_cont_500_bf_scaffold_57666
Species: Algibacter lectus (50%)
2 1161 bp 40.48 2.15 52.20
SCNpilot_cont_500_bf_scaffold_29895
Species: Bacteroides intestinalis CAG:564 (50%)
2 1972 bp 40.47 3.04 85.65
SCNpilot_cont_500_bf_scaffold_22967
Species: Chitinophaga pinensis (50%)
2 2413 bp 40.90 3.63 99.34
SCNpilot_cont_500_bf_scaffold_48675
Species: Chryseobacterium sp. CF314 (50%)
2 1332 bp 40.69 3.38 93.02
SCNpilot_cont_500_bf_scaffold_49563
Species: Niastella koreensis (50%)
2 1315 bp 43.57 3.42 96.96
SCNpilot_cont_500_bf_scaffold_47635
Species: GWA2_Bacteroidetes_32_17_curated (100%)
2 1358 bp 31.37 3.13 100.74
SCNpilot_cont_500_bf_scaffold_67268
Species: Pontibacter sp. BAB1700 (50%)
2 1003 bp 44.27 2.99 98.70
SCNpilot_cont_500_bf_scaffold_63844
Species: Arcticibacter svalbardensis (50%)
2 1056 bp 45.08 2.60 99.43
SCNpilot_cont_500_bf_scaffold_40209
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1559 bp 45.54 4.01 96.02
SCNpilot_cont_500_bf_scaffold_37962
Species: Niastella koreensis (50%)
2 1631 bp 45.62 2.30 101.72
SCNpilot_cont_500_bf_scaffold_52178
Species: Flavihumibacter solisilvae (50%)
2 1262 bp 45.32 4.16 100.79
SCNpilot_cont_500_bf_scaffold_61859
Species: Niabella soli (100%)
2 1090 bp 43.85 3.67 97.71
Displaying items 151-200 of 609 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.