ggKbase home page

SCNpilot_cont_500_bf_scaffold_908_11

Organism: SCNPILOT_CONT_500_BF_Pseudonocardia_plasmid_like_70_33

RP 0 / 55 BSCG 0 / 51 ASCG 0 / 38
Location: comp(11470..12021)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Frankia sp. BCU110501 RepID=UPI000363EC34 similarity UNIREF
DB: UNIREF100
  • Identity: 36.6
  • Coverage: 172.0
  • Bit_score: 107
  • Evalue 1.80e-20
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 36.5
  • Coverage: 178.0
  • Bit_score: 105
  • Evalue 2.10e-20
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADP83713.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 36.5
  • Coverage: 178.0
  • Bit_score: 105
  • Evalue 9.40e-20

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Frankia sp. EuI1c → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 552
GTGAGCACGACCAGCCCCGATGATCTGATCTGTCGAAGCCGGCAGGGCGACCCGCGCGCGTTGCACCGGTTGATCGACGCGCATCGCCCGCAGCTGCTCGCGTTCTGCGCGCGCTTCCGGGACGACCCCGACGACCGCCAGGAGCTCGCCCAGCTGGTCATGATCCGCGTGTGGCGCGGCATCGGGGGGTTCGACGGCCGGTCGAGCTTCAGCACATGGCTGTTCCAGATCGTGCGCAACACCGCCGCCTCCGAGCACACCCGCCAGGCGCGGGTGCCGCGCCCGGTGGACTTGCACACCGATGGGTGCGCGCTGCTGGTGCCGGCCGCGGGTCCGAGCCTGGAGGACGTCGTGGTCCTGCGCGACGAGGTCGACCGGGCGCTGGTCAAGGTGGCGCCGCCGTTTCGTCGGGTGCTGGAGCTGGTGGACGTGTGGGGCTGCCCGCAGGCCGAGGCCGCGGCGCTCTGCGCGGTGGCCGAGCCGACGGTGCGGACGAGATTGTGGCGGGGACGGCGGGCGCTGCGGGAGGCGCTGCGGCCCGACGCCGCGTGA
PROTEIN sequence
Length: 184
VSTTSPDDLICRSRQGDPRALHRLIDAHRPQLLAFCARFRDDPDDRQELAQLVMIRVWRGIGGFDGRSSFSTWLFQIVRNTAASEHTRQARVPRPVDLHTDGCALLVPAAGPSLEDVVVLRDEVDRALVKVAPPFRRVLELVDVWGCPQAEAAALCAVAEPTVRTRLWRGRRALREALRPDAA*