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SCNPILOT_CONT_500_BF_Eukaryote_17_6

SCNPILOT_CONT_500_BF_unknown_17_6
In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy:

Taxonomy override: Eukaryote

Description

from TS-ESOM, split with ggkbase

Displaying items 1-50 of 65 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_6940 3 5848 bp 14.98 4.62 68.90
SCNpilot_cont_500_bf_scaffold_11212 5 6913 bp 13.45 4.92 56.94
SCNpilot_cont_500_bf_scaffold_15975 2 5176 bp 14.70 4.93 62.83
SCNpilot_cont_500_bf_scaffold_11051 3 9404 bp 17.09 4.97 81.57
SCNpilot_cont_500_bf_scaffold_5846 2 9647 bp 18.90 5.03 22.20
SCNpilot_cont_500_bf_scaffold_5061 5 8389 bp 17.49 5.10 83.79
SCNpilot_cont_500_bf_scaffold_6084 3 6502 bp 17.09 5.11 83.01
SCNpilot_cont_500_bf_scaffold_15738 4 5369 bp 15.65 5.17 62.36
SCNpilot_cont_500_bf_scaffold_9871 2 5967 bp 18.94 5.20 86.17
SCNpilot_cont_500_bf_scaffold_14034 1 5916 bp 17.87 5.28 100.00
SCNpilot_cont_500_bf_scaffold_12490 8 6924 bp 14.11 5.38 57.37
SCNpilot_cont_500_bf_scaffold_6252 5 6369 bp 12.03 5.38 37.97
SCNpilot_cont_500_bf_scaffold_15981 4 5284 bp 14.82 5.39 60.92
SCNpilot_cont_500_bf_scaffold_12500 5 12609 bp 17.08 5.39 65.81
SCNpilot_cont_500_bf_scaffold_6619 8 10060 bp 14.24 5.39 70.29
SCNpilot_cont_500_bf_scaffold_4348 6 9773 bp 17.64 5.40 85.00
SCNpilot_cont_500_bf_scaffold_6882 3 11993 bp 16.68 5.48 87.75
SCNpilot_cont_500_bf_scaffold_7197 2 5687 bp 18.94 5.49 85.62
SCNpilot_cont_500_bf_scaffold_18759 4 5023 bp 13.60 5.52 63.13
SCNpilot_cont_500_bf_scaffold_5270 6 7320 bp 14.28 5.53 75.57
SCNpilot_cont_500_bf_scaffold_7693
Order: Bacillales (66.67%)
3 5411 bp 21.84 5.54 89.15
SCNpilot_cont_500_bf_scaffold_5475 7 13870 bp 17.95 5.57 80.37
SCNpilot_cont_500_bf_scaffold_13365
Species: Plasmodium falciparum (50%)
2 5793 bp 10.55 5.57 27.96
SCNpilot_cont_500_bf_scaffold_7994 3 6505 bp 19.54 5.57 63.14
SCNpilot_cont_500_bf_scaffold_8298
Species: Sclerotinia sclerotiorum (50%)
2 5099 bp 16.59 5.69 62.54
SCNpilot_cont_500_bf_scaffold_3586 10 15134 bp 16.00 5.70 80.10
SCNpilot_cont_500_bf_scaffold_5516 8 16061 bp 16.34 5.76 78.28
SCNpilot_cont_500_bf_scaffold_5802 11 7737 bp 16.80 5.85 85.58
SCNpilot_cont_500_bf_scaffold_4938
Species: Oxytricha trifallax (50%)
2 7764 bp 20.03 5.86 87.79
SCNpilot_cont_500_bf_scaffold_10404 7 6131 bp 14.83 5.91 72.17
SCNpilot_cont_500_bf_scaffold_10032 1 8931 bp 17.14 5.93 89.52
SCNpilot_cont_500_bf_scaffold_8337 8 7564 bp 12.64 5.98 60.52
SCNpilot_cont_500_bf_scaffold_32278 6 5467 bp 13.41 5.99 69.20
SCNpilot_cont_500_bf_scaffold_10812 5 5649 bp 17.86 6.02 66.49
SCNpilot_cont_500_bf_scaffold_10955 9 6728 bp 14.51 6.06 62.69
SCNpilot_cont_500_bf_scaffold_4229 6 8731 bp 14.66 6.07 73.29
SCNpilot_cont_500_bf_scaffold_8494 7 7283 bp 20.80 6.21 70.73
SCNpilot_cont_500_bf_scaffold_6113 1 6474 bp 17.59 6.22 86.65
SCNpilot_cont_500_bf_scaffold_16155 5 5891 bp 16.77 6.24 71.04
SCNpilot_cont_500_bf_scaffold_22294 2 5918 bp 13.62 6.25 59.26
SCNpilot_cont_500_bf_scaffold_3153 8 11215 bp 18.16 6.29 91.81
SCNpilot_cont_500_bf_scaffold_7861 4 6847 bp 16.24 6.32 70.72
SCNpilot_cont_500_bf_scaffold_9378 7 7120 bp 14.93 6.32 66.32
SCNpilot_cont_500_bf_scaffold_8441 5 6740 bp 14.30 6.34 52.97
SCNpilot_cont_500_bf_scaffold_9083 2 6136 bp 22.13 6.36 97.78
SCNpilot_cont_500_bf_scaffold_8193
Species: Serratia sp. DD3 (50%)
2 5154 bp 18.30 6.40 80.15
SCNpilot_cont_500_bf_scaffold_3698 5 14101 bp 17.33 6.42 36.25
SCNpilot_cont_500_bf_scaffold_28308 4 5075 bp 14.42 6.45 79.63
SCNpilot_cont_500_bf_scaffold_2805 1 12343 bp 19.05 6.46 87.40
SCNpilot_cont_500_bf_scaffold_4204 11 8782 bp 14.89 6.49 68.05
Displaying items 1-50 of 65 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.