ggKbase home page

SCNpilot_cont_500_bf_scaffold_40

Search features with annotation key words

Displaying items 31-60 of 187 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_40_31
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44738..45640)
DNA (903bp) protein (301aa)
RNA polymerase sigma70 n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FBY0_9RHIZ
RNA polymerase sigma70 {ECO:0000313|EMBL:ESX64234.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_40_32
Chamaesiphon minutus, Chamaesiphon, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(45914..47350)
DNA (1437bp) protein (479aa)
Glycosyl transferase n=1 Tax=Chamaesiphon minutus PCC 6605 RepID=K9UAE6_9CHRO
glycosyl transferase
Glycosyl transferase {ECO:0000313|EMBL:AFY91603.1}; TaxID=1173020 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Chamaesiphon.;" source="Chamaesiphon minutus PCC 6605.;"
SCNpilot_cont_500_bf_scaffold_40_33
Dehalobacter restrictus, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(47443..49521)
DNA (2079bp) protein (693aa)
LPS biosynthesis protein , RfbU family n=1 Tax=Dehalobacter sp. E1 RepID=UPI0002FA7D16 rbh
RfbU family LPS biosynthesis protein {ECO:0000313|EMBL:AHF09389.1}; TaxID=871738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter restrictus DSM 9455.;"
LPS biosynthesis protein , RfbU family rbh
SCNpilot_cont_500_bf_scaffold_40_34
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

49838..50737
DNA (900bp) protein (300aa)
Lipolytic protein G-D-S-L family n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C8L4_SPHTD
lipolytic protein G-D-S-L family
Lipolytic enzyme, G-D-S-L {ECO:0000313|EMBL:ACM07307.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
SCNpilot_cont_500_bf_scaffold_40_35
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

50781..53462
DNA (2682bp) protein (894aa)
ABC transporter, permease protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F2Z3_ACIC5
ABC transporter permease; K02004 putative ABC transport system permease protein
ABC transporter, permease protein {ECO:0000313|EMBL:ACO31848.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
SCNpilot_cont_500_bf_scaffold_40_36
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53677..55173
DNA (1497bp) protein (499aa)
Uncharacterized protein id=3059925 bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
SCNpilot_cont_500_bf_scaffold_40_37
CSP1_5_NC10, NC10, Bacteria

Not on your lists

55307..56419
DNA (1113bp) protein (371aa)
radical SAM protein id=14429324 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10 rbh
radical SAM domain-containing protein rbh
Tax=CSP1_5_NC10
SCNpilot_cont_500_bf_scaffold_40_38
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

56496..57125
DNA (630bp) protein (210aa)
Uncharacterized protein id=4911276 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SCNpilot_cont_500_bf_scaffold_40_39
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

57125..58156
DNA (1032bp) protein (344aa)
O-methyltransferase family 2 n=1 Tax=uncultured bacterium 70 RepID=E3T6I1_9BACT
O-methyltransferase family protein
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
SCNpilot_cont_500_bf_scaffold_40_40
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

58183..59208
DNA (1026bp) protein (342aa)
Radical SAM domain protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TLL4_9CHLR
Radical SAM domain protein {ECO:0000313|EMBL:EFH86664.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
radical SAM protein
SCNpilot_cont_500_bf_scaffold_40_41
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

59210..59815
DNA (606bp) protein (202aa)
NUDIX hydrolase; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13]
NUDIX hydrolase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C929_SPHTD
NUDIX hydrolase {ECO:0000313|EMBL:ACZ40322.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
SCNpilot_cont_500_bf_scaffold_40_42
CSP1_5_NC10, NC10, Bacteria

Not on your lists

59812..60525
DNA (714bp) protein (238aa)
hypothetical protein id=14429315 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein; K09931 hypothetical protein
Tax=CSP1_5_NC10
SCNpilot_cont_500_bf_scaffold_40_43
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

60515..61255
DNA (741bp) protein (247aa)
Dolichol phosphate mannosyltransferase or dolichol phosphate beta glucosyltrandferase id=4911247 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Dolichol phosphate mannosyltransferase or dolichol phosphate beta glucosyltrandferase
Tax=RBG_16_Chloroflexi_57_11_curated
SCNpilot_cont_500_bf_scaffold_40_44
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61294..62124
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI000372CFB1
purine or other phosphorylase family 1
Tax=RBG_16_Gammaproteobacteria_51_14_curated
SCNpilot_cont_500_bf_scaffold_40_45
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

62600..64621
DNA (2022bp) protein (674aa)
Transcriptional regulator, XRE family n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CJ09_THET1
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACZ43729.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
SCNpilot_cont_500_bf_scaffold_40_46
unknown

Not on your lists

65734..67266
DNA (1533bp) protein (511aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_40_47
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(67454..68986)
DNA (1533bp) protein (511aa)
transcriptional regulator; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12]
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZP5_CALAS
Tax=RBG_16_Chloroflexi_57_11_curated
SCNpilot_cont_500_bf_scaffold_40_48
Roseovarius mucosus, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69111..70055)
DNA (945bp) protein (315aa)
plasmid partitioning protein ParB n=1 Tax=Hippea alviniae RepID=UPI0003B3535A
ParB-like partition protein {ECO:0000313|EMBL:KGM89589.1}; TaxID=1288298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius mucosus DSM 17069.;"
stage 0 sporulation protein J; K03497 chromosome partitioning protein, ParB family
SCNpilot_cont_500_bf_scaffold_40_49
Clostridium sp. CAG:921, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(70033..70788)
DNA (756bp) protein (252aa)
ATPase involved in chromosome partitioning n=1 Tax=Clostridium sp. CAG:921 RepID=R5LFI5_9CLOT
ATPase involved in chromosome partitioning {ECO:0000313|EMBL:CCY71916.1}; TaxID=1262847 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:921.;"
Cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
SCNpilot_cont_500_bf_scaffold_40_50
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(71230..72372)
DNA (1143bp) protein (381aa)
cupin; K00450 gentisate 1,2-dioxygenase [EC:1.13.11.4] rbh
Cupin 2 conserved barrel domain protein n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WS41_KYRT2 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFF29209.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
SCNpilot_cont_500_bf_scaffold_40_51
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72401..73801)
DNA (1401bp) protein (467aa)
Succinate-semialdehyde dehdyrogenase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XJM5_SORCE rbh
succinate-semialdehyde dehdyrogenase rbh
Succinate-semialdehyde dehdyrogenase {ECO:0000313|EMBL:AGP32716.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCNpilot_cont_500_bf_scaffold_40_52
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(73839..74609)
DNA (771bp) protein (257aa)
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:CCF14009.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CCF14009.1};; TaxID=1118154 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus laterosporus GI-9.;"
3-ketoacyl-ACP reductase n=1 Tax=Brevibacillus laterosporus RepID=UPI00037018C4
3-oxoacyl-(acyl-carrier-protein) reductase
SCNpilot_cont_500_bf_scaffold_40_53
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(74611..75285)
DNA (675bp) protein (225aa)
Class II aldolase/adducin family protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTT0_9FIRM
Class II aldolase/adducin family protein {ECO:0000313|EMBL:EAX46564.1}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
ribulose-5-phosphate 4-epimerase-like epimerase or aldolase
SCNpilot_cont_500_bf_scaffold_40_54
Mycobacterium kansasii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(75326..76795)
DNA (1470bp) protein (490aa)
3-phosphoglycerate dehydrogenase n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=U5WNK8_MYCKA
3-phosphoglycerate dehydrogenase
3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:AGZ49501.1}; TaxID=557599 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium kansasii ATCC 12478.;"
SCNpilot_cont_500_bf_scaffold_40_55
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(76792..77838)
DNA (1047bp) protein (349aa)
phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:AEG16574.1}; EC=1.1.1.95 {ECO:0000313|EMBL:AEG16574.1};; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
Phosphoglycerate dehydrogenase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CLF6_DESK7
SCNpilot_cont_500_bf_scaffold_40_56
Syntrophothermus lipocalidus, Syntrophothermus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(77869..78750)
DNA (882bp) protein (294aa)
Purine or other phosphorylase family 1 n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CMK2_SYNLT
purine or other phosphorylase family 1
Purine or other phosphorylase family 1 {ECO:0000313|EMBL:ADI01937.1}; TaxID=643648 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophothermus.;" source="Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1).;"
SCNpilot_cont_500_bf_scaffold_40_57
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(78760..79602)
DNA (843bp) protein (281aa)
Gluconolactonase (EC:3.1.1.17)
SMP-30/Gluconolaconase/LRE-like region-containing protein id=3059929 bin=GWF2_Ignavibacteria_35_20 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
Tax=RBG_16_Deltaproteobacteria_48_10_curated
SCNpilot_cont_500_bf_scaffold_40_58
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(79604..80155)
DNA (552bp) protein (184aa)
Putative ring-cleaving dioxygenase MhqE {ECO:0000313|EMBL:KHE91431.1}; EC=1.13.11.- {ECO:0000313|EMBL:KHE91431.1};; TaxID=237368 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Scalindua.;" source="Candidatus Scalindua brodae.;"
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Natrialba hulunbeirensis JCM 10989 RepID=L9ZXR2_9EURY
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_cont_500_bf_scaffold_40_59
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(80230..81057)
DNA (828bp) protein (276aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-acyl carrier protein reductase {ECO:0000313|EMBL:CBE67788.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CBE67788.1};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
3-oxoacyl-acyl carrier protein reductase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLC2_9BACT
SCNpilot_cont_500_bf_scaffold_40_60
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81150..82403)
DNA (1254bp) protein (418aa)
hypothetical protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI0003183DD2
hydrolase/M24 family peptidase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Displaying items 31-60 of 187 in total

View Taxonomy