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SCNPILOT_CONT_500_BF_Afipia_63_5

In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy: Afipia  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

from TS-ESOM, added more from ggkbase

Displaying items 1-50 of 1125 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_2134
Order: Rhizobiales (82.35%)
17 15762 bp 59.71 24.19 87.72
SCNpilot_cont_500_bf_scaffold_2711
Order: Rhizobiales (90.7%)
43 39601 bp 62.90 19.25 86.56
SCNpilot_cont_500_bf_scaffold_18682
Genus: Afipia (66.67%)
9 6967 bp 63.73 9.83 96.89
SCNpilot_cont_500_bf_scaffold_934
Class: Alphaproteobacteria (68.85%)
61 63570 bp 70.65 8.86 87.11
SCNpilot_cont_500_bf_scaffold_34076
Genus: Afipia (66.67%)
3 1780 bp 62.64 8.43 78.71
SCNpilot_cont_500_bf_scaffold_22993
Genus: Afipia (60%)
5 2411 bp 64.79 8.40 100.29
SCNpilot_cont_500_bf_scaffold_46016
Species: Afipia broomeae (50%)
2 1398 bp 59.44 8.40 74.25
SCNpilot_cont_500_bf_scaffold_32484
Genus: Afipia (50%)
6 2833 bp 65.13 8.38 87.89
SCNpilot_cont_500_bf_scaffold_55692
Species: Afipia broomeae (100%)
2 1197 bp 61.49 8.35 99.25
SCNpilot_cont_500_bf_scaffold_24199
Species: Afipia broomeae (50%)
2 2322 bp 65.37 8.29 89.41
SCNpilot_cont_500_bf_scaffold_56289
Species: Afipia broomeae (100%)
1 1186 bp 66.36 8.01 99.92
SCNpilot_cont_500_bf_scaffold_2020
Genus: Afipia (50%)
16 15963 bp 62.10 7.99 86.17
SCNpilot_cont_500_bf_scaffold_19302
Species: Afipia clevelandensis (50%)
4 2749 bp 62.17 7.91 85.23
SCNpilot_cont_500_bf_scaffold_4285
Species: Afipia broomeae (56.25%)
16 13990 bp 64.12 7.84 80.28
SCNpilot_cont_500_bf_scaffold_63610
Species: Afipia felis (50%)
2 1060 bp 62.92 7.78 92.55
SCNpilot_cont_500_bf_scaffold_14923
Species: Afipia broomeae (66.67%)
3 3319 bp 62.76 7.76 95.00
SCNpilot_cont_500_bf_scaffold_23001
Species: Afipia clevelandensis (66.67%)
3 2411 bp 61.88 7.67 87.47
SCNpilot_cont_500_bf_scaffold_41330
Species: Afipia clevelandensis (50%)
2 3230 bp 66.13 7.66 88.14
SCNpilot_cont_500_bf_scaffold_36055
Species: Afipia clevelandensis (50%)
2 1701 bp 65.96 7.64 91.71
SCNpilot_cont_500_bf_scaffold_68565
Species: Afipia broomeae (50%)
2 1672 bp 66.27 7.63 99.76
SCNpilot_cont_500_bf_scaffold_6441
Species: Afipia felis (60%)
5 6205 bp 61.77 7.61 98.15
SCNpilot_cont_500_bf_scaffold_20115
Species: Afipia felis (100%)
4 2665 bp 67.73 7.60 95.91
SCNpilot_cont_500_bf_scaffold_96098
Species: Afipia clevelandensis (50%)
2 1329 bp 59.07 7.52 43.12
SCNpilot_cont_500_bf_scaffold_63078
Species: Afipia felis (100%)
1 1069 bp 62.02 7.48 99.91
SCNpilot_cont_500_bf_scaffold_40420
Species: Afipia clevelandensis (50%)
2 1552 bp 61.60 7.41 79.83
SCNpilot_cont_500_bf_scaffold_52792
Species: Afipia clevelandensis (100%)
1 1251 bp 64.99 7.39 99.76
SCNpilot_cont_500_bf_scaffold_24462
Species: Afipia broomeae (66.67%)
3 2302 bp 62.08 7.38 97.48
SCNpilot_cont_500_bf_scaffold_23944
Species: Afipia broomeae (50%)
2 2340 bp 59.06 7.37 72.18
SCNpilot_cont_500_bf_scaffold_11396
Genus: Afipia (60%)
5 4049 bp 62.46 7.35 90.76
SCNpilot_cont_500_bf_scaffold_57941
Species: Afipia felis (50%)
2 1156 bp 61.94 7.35 88.49
SCNpilot_cont_500_bf_scaffold_18912
Species: Afipia sp. 1NLS2 (50%)
4 2792 bp 66.73 7.34 85.64
SCNpilot_cont_500_bf_scaffold_59769
Species: Afipia felis (100%)
3 1125 bp 64.44 7.33 100.00
SCNpilot_cont_500_bf_scaffold_20095
Species: Afipia sp. 1NLS2 (66.67%)
3 2667 bp 67.60 7.31 96.29
SCNpilot_cont_500_bf_scaffold_16434
Species: Afipia broomeae (75%)
4 4126 bp 65.22 7.27 88.92
SCNpilot_cont_500_bf_scaffold_20180
Species: Afipia broomeae (50%)
2 2659 bp 63.07 7.24 91.05
SCNpilot_cont_500_bf_scaffold_37753
Species: Afipia felis (75%)
4 2796 bp 61.05 7.24 85.73
SCNpilot_cont_500_bf_scaffold_28673
Species: Afipia felis (100%)
2 2037 bp 65.73 7.24 94.85
SCNpilot_cont_500_bf_scaffold_50760
Species: Afipia sp. P52-10 (50%)
2 1290 bp 62.71 7.17 95.58
SCNpilot_cont_500_bf_scaffold_13491
Species: Afipia clevelandensis (50%)
4 5227 bp 65.60 7.17 83.11
SCNpilot_cont_500_bf_scaffold_36408
Species: Afipia broomeae (50%)
2 1687 bp 63.31 7.11 81.80
SCNpilot_cont_500_bf_scaffold_42671
Species: Afipia sp. 1NLS2 (100%)
2 1485 bp 57.44 7.07 57.17
SCNpilot_cont_500_bf_scaffold_29725
Species: Afipia sp. P52-10 (50%)
2 1981 bp 62.65 7.07 98.44
SCNpilot_cont_500_bf_scaffold_28378
Species: Afipia felis (75%)
4 2053 bp 64.15 7.06 86.80
SCNpilot_cont_500_bf_scaffold_12379
Order: Rhizobiales (85.71%)
7 6878 bp 62.11 7.05 76.20
SCNpilot_cont_500_bf_scaffold_7385
Species: Afipia broomeae (50%)
6 5582 bp 63.36 6.99 86.74
SCNpilot_cont_500_bf_scaffold_72040
Species: Afipia clevelandensis (50%)
2 1432 bp 63.62 6.98 99.09
SCNpilot_cont_500_bf_scaffold_67122
Species: Afipia broomeae (100%)
1 1005 bp 62.49 6.97 99.70
SCNpilot_cont_500_bf_scaffold_64796
Species: Afipia broomeae (100%)
1 1041 bp 63.98 6.96 84.73
SCNpilot_cont_500_bf_scaffold_27251
Genus: Afipia (50%)
4 3591 bp 65.75 6.96 69.34
SCNpilot_cont_500_bf_scaffold_23298
Species: Afipia felis (75%)
4 2388 bp 61.89 6.91 86.56
Displaying items 1-50 of 1125 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.