ggKbase home page
Advanced Search
Search Help

SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_CONT_500_P_unknown_33_75
In projects: SCNPILOT_CONT_500_P

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_cont_500_p_UNK

Properties

Avg. coverage: 74.95 Longest contig: 245.44 Kbp Bin length: 70.19 Mbp GC content: 33.13 %
Contigs count: 7579 Features count: 78513 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 40 / 55 MC: 34 BSCG 20 / 51 MC: 11 ASCG 30 / 38 MC: 21

Description

multiple coverage peaks but merged into one bin based on ESOM.

Displaying items 1-50 of 7579 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_50277 3 1507 bp 32.45 43.30 108.49
scnpilot_cont_500_p_scaffold_151145 3 1010 bp 35.64 70.40 106.63
scnpilot_cont_500_p_scaffold_81041 3 1103 bp 31.19 69.76 106.35
scnpilot_cont_500_p_scaffold_59099
Species: Adineta vaga (50%)
2 1358 bp 31.59 43.08 106.04
scnpilot_cont_500_p_scaffold_25990
Species: Philodina roseola (50%)
2 2278 bp 33.93 39.84 105.36
scnpilot_cont_500_p_scaffold_81910 2 1095 bp 37.17 74.11 104.66
scnpilot_cont_500_p_scaffold_148510
Species: Adineta vaga (50%)
2 1038 bp 31.02 35.84 104.62
scnpilot_cont_500_p_scaffold_80385 3 1109 bp 32.91 47.61 104.42
scnpilot_cont_500_p_scaffold_61112 2 1329 bp 29.57 59.82 104.29
scnpilot_cont_500_p_scaffold_82401 3 1753 bp 29.32 57.42 104.22
scnpilot_cont_500_p_scaffold_85244
Species: Ictalurus punctatus (50%)
2 1443 bp 27.30 62.58 104.16
scnpilot_cont_500_p_scaffold_160538
Species: Tetrahymena thermophila (100%)
2 1435 bp 30.45 34.91 104.11
scnpilot_cont_500_p_scaffold_142322
Species: Xenopus (Silurana) tropicalis (50%)
2 1274 bp 33.59 60.16 103.85
scnpilot_cont_500_p_scaffold_115865
Domain: Viridiplantae (50%)
4 1646 bp 29.40 70.26 103.52
scnpilot_cont_500_p_scaffold_71533 3 2013 bp 36.12 77.27 103.43
scnpilot_cont_500_p_scaffold_81866
Species: Adineta vaga (50%)
2 1554 bp 29.86 70.95 103.28
scnpilot_cont_500_p_scaffold_34726 2 2672 bp 31.06 73.71 103.07
scnpilot_cont_500_p_scaffold_124612 2 1275 bp 32.94 49.29 103.06
scnpilot_cont_500_p_scaffold_118236
Species: Acinetobacter rudis (50%)
2 1416 bp 36.30 40.04 102.97
scnpilot_cont_500_p_scaffold_151241
Species: Exophiala sideris (50%)
2 1127 bp 34.96 112.60 102.75
scnpilot_cont_500_p_scaffold_60803 2 1667 bp 32.39 42.11 102.58
scnpilot_cont_500_p_scaffold_53445
Species: Adineta vaga (100%)
2 1451 bp 31.70 116.71 102.34
scnpilot_cont_500_p_scaffold_61006
Species: Adineta vaga (100%)
3 2045 bp 35.06 116.11 101.81
scnpilot_cont_500_p_scaffold_81145
Species: Lottia gigantea (50%)
2 1430 bp 34.97 67.34 101.75
scnpilot_cont_500_p_scaffold_130266
Species: Adineta vaga (50%)
2 1227 bp 27.79 73.59 101.71
scnpilot_cont_500_p_scaffold_100757
Species: Tetrahymena thermophila (100%)
2 1284 bp 36.29 61.92 101.64
scnpilot_cont_500_p_scaffold_125956 2 1158 bp 27.89 76.17 101.55
scnpilot_cont_500_p_scaffold_47709 3 1558 bp 32.22 72.69 101.48
scnpilot_cont_500_p_scaffold_21007
Species: Tetranychus urticae (50%)
2 3880 bp 39.43 82.69 100.98
scnpilot_cont_500_p_scaffold_56546
Species: Acanthamoeba castellanii (50%)
2 1397 bp 35.79 72.80 100.93
scnpilot_cont_500_p_scaffold_82439 3 1644 bp 30.60 60.68 100.91
scnpilot_cont_500_p_scaffold_75954
Species: Adineta vaga (50%)
2 1152 bp 30.82 82.42 100.78
scnpilot_cont_500_p_scaffold_80889 3 2102 bp 36.16 44.67 100.76
scnpilot_cont_500_p_scaffold_169300 2 1204 bp 34.63 55.69 100.66
scnpilot_cont_500_p_scaffold_172278
Species: Botrytis cinerea (50%)
2 1086 bp 36.56 64.23 100.55
scnpilot_cont_500_p_scaffold_52255
Species: Adineta vaga (100%)
2 1993 bp 31.81 58.78 100.55
scnpilot_cont_500_p_scaffold_66053
Species: Capsaspora owczarzaki (100%)
2 1780 bp 37.42 53.01 100.45
scnpilot_cont_500_p_scaffold_79233 3 1120 bp 30.27 49.15 100.45
scnpilot_cont_500_p_scaffold_63069 3 1303 bp 27.55 38.33 100.38
scnpilot_cont_500_p_scaffold_90153 2 1026 bp 36.16 68.57 100.29
scnpilot_cont_500_p_scaffold_84316
Species: Fibrisoma limi (50%)
2 1074 bp 33.05 95.25 100.28
scnpilot_cont_500_p_scaffold_59110
Species: Haloarcula sinaiiensis (50%)
2 1867 bp 39.21 72.15 100.27
scnpilot_cont_500_p_scaffold_48664
Species: Adineta vaga (50%)
2 1538 bp 28.67 61.74 100.26
scnpilot_cont_500_p_scaffold_73474
Species: Dendroctonus ponderosae (50%)
2 1179 bp 35.71 31.42 100.25
scnpilot_cont_500_p_scaffold_20659
Species: Aspergillus nidulans (50%)
2 2931 bp 27.81 68.32 100.21
scnpilot_cont_500_p_scaffold_81926
Species: Adineta vaga (50%)
2 1527 bp 29.99 81.04 100.20
scnpilot_cont_500_p_scaffold_91832
Species: Adineta vaga (100%)
2 1303 bp 31.24 59.40 100.15
scnpilot_cont_500_p_scaffold_125746
Species: Adineta vaga (50%)
2 1408 bp 30.47 34.52 100.14
scnpilot_cont_500_p_scaffold_38334 2 1792 bp 27.90 61.27 100.11
scnpilot_cont_500_p_scaffold_25303
Species: Chryseobacterium sp. StRB126 (50%)
2 2826 bp 28.80 76.27 100.11
Displaying items 1-50 of 7579 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.