ggKbase home page

SCNPILOT_CONT_500_P_Chloroflexi-like_54_4

SCNPILOT_CONT_500_P_Bacteria_54_4
In projects: SCNPILOT_CONT_500_P  |  chloroflexi

Consensus taxonomy: Bacteria

Taxonomy override: Chloroflexi

Description

highly fragmented, from ESOM

Displaying items 451-500 of 660 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_4132 7 8976 bp 45.79 3.94 90.71
scnpilot_cont_500_p_scaffold_5358
Domain: Bacteria (57.14%)
7 7180 bp 52.90 4.14 91.34
scnpilot_cont_500_p_scaffold_6409 7 6124 bp 52.94 3.87 87.25
scnpilot_cont_500_p_scaffold_3425
Domain: Bacteria (71.43%)
7 10535 bp 49.99 3.82 88.53
scnpilot_cont_500_p_scaffold_4914
Domain: Bacteria (100%)
7 7754 bp 53.53 4.49 89.14
scnpilot_cont_500_p_scaffold_4918
Domain: Bacteria (85.71%)
7 7749 bp 55.84 4.14 89.62
scnpilot_cont_500_p_scaffold_6943
Domain: Bacteria (100%)
7 5686 bp 58.55 4.96 93.81
scnpilot_cont_500_p_scaffold_3708
Domain: Bacteria (85.71%)
7 9871 bp 43.98 4.65 90.87
scnpilot_cont_500_p_scaffold_5647
Domain: Bacteria (71.43%)
7 6869 bp 51.68 4.63 71.32
scnpilot_cont_500_p_scaffold_5392
Domain: Bacteria (100%)
7 7148 bp 47.55 4.91 74.54
scnpilot_cont_500_p_scaffold_3718
Domain: Bacteria (85.71%)
7 9837 bp 55.43 4.54 90.88
scnpilot_cont_500_p_scaffold_5914
Domain: Bacteria (100%)
7 6595 bp 54.63 4.71 70.78
scnpilot_cont_500_p_scaffold_5662
Domain: Bacteria (85.71%)
7 6855 bp 54.46 4.31 88.67
scnpilot_cont_500_p_scaffold_4182
Domain: Bacteria (100%)
7 8905 bp 55.19 3.99 86.92
scnpilot_cont_500_p_scaffold_4951
Domain: Bacteria (100%)
7 7698 bp 57.30 4.70 88.50
scnpilot_cont_500_p_scaffold_1641
Domain: Bacteria (85.71%)
7 17542 bp 46.47 4.61 85.08
scnpilot_cont_500_p_scaffold_6202
Phylum: Firmicutes (57.14%)
7 6308 bp 52.16 4.09 90.31
scnpilot_cont_500_p_scaffold_3987
Domain: Bacteria (85.71%)
7 9280 bp 54.63 4.11 89.77
scnpilot_cont_500_p_scaffold_6211
Domain: Bacteria (57.14%)
7 6303 bp 55.08 3.69 90.05
scnpilot_cont_500_p_scaffold_6214
Phylum: Chloroflexi (50%)
6 6303 bp 48.79 4.31 82.29
scnpilot_cont_500_p_scaffold_3492
Domain: Bacteria (50%)
6 10379 bp 53.64 3.89 96.19
scnpilot_cont_500_p_scaffold_6734
Domain: Bacteria (50%)
6 9077 bp 43.80 4.63 55.39
scnpilot_cont_500_p_scaffold_4466
Domain: Bacteria (100%)
6 8437 bp 53.93 4.50 83.99
scnpilot_cont_500_p_scaffold_6486
Domain: Bacteria (66.67%)
6 6066 bp 56.18 4.92 91.54
scnpilot_cont_500_p_scaffold_7119
Phylum: Chloroflexi (50%)
6 8715 bp 56.73 4.54 72.77
scnpilot_cont_500_p_scaffold_8366
Domain: Bacteria (83.33%)
6 4901 bp 54.30 4.77 74.31
scnpilot_cont_500_p_scaffold_5192
Domain: Bacteria (83.33%)
6 7393 bp 47.26 4.61 70.85
scnpilot_cont_500_p_scaffold_4994
Domain: Bacteria (83.33%)
6 7644 bp 54.32 4.38 94.00
scnpilot_cont_500_p_scaffold_3772
Domain: Bacteria (66.67%)
6 9727 bp 49.02 3.96 88.61
scnpilot_cont_500_p_scaffold_8123
Phylum: Firmicutes (50%)
6 5019 bp 51.19 4.36 85.48
scnpilot_cont_500_p_scaffold_4749
Domain: Bacteria (50%)
6 7987 bp 51.22 4.85 83.50
scnpilot_cont_500_p_scaffold_3781
Domain: Bacteria (83.33%)
6 9701 bp 54.63 3.96 92.99
scnpilot_cont_500_p_scaffold_5989
Domain: Bacteria (100%)
6 6523 bp 58.96 4.81 80.90
scnpilot_cont_500_p_scaffold_5233
Domain: Bacteria (66.67%)
6 7340 bp 53.94 3.94 94.66
scnpilot_cont_500_p_scaffold_6283
Domain: Bacteria (83.33%)
6 6245 bp 57.20 4.01 83.78
scnpilot_cont_500_p_scaffold_7943
Domain: Bacteria (66.67%)
6 5117 bp 52.43 3.55 89.29
scnpilot_cont_500_p_scaffold_8422
Domain: Bacteria (83.33%)
6 7312 bp 52.94 4.08 91.66
scnpilot_cont_500_p_scaffold_5760
Domain: Bacteria (66.67%)
6 6762 bp 49.78 3.66 77.64
scnpilot_cont_500_p_scaffold_7956
Domain: Bacteria (66.67%)
6 5980 bp 43.73 4.34 90.95
scnpilot_cont_500_p_scaffold_6046
Domain: Bacteria (83.33%)
6 6458 bp 54.85 4.27 79.85
scnpilot_cont_500_p_scaffold_5776
Domain: Bacteria (50%)
6 6752 bp 56.58 4.18 91.08
scnpilot_cont_500_p_scaffold_5780
Domain: Bacteria (66.67%)
6 6749 bp 56.93 4.96 87.79
scnpilot_cont_500_p_scaffold_4046
Phylum: Chloroflexi (50%)
6 9161 bp 42.58 3.62 80.66
scnpilot_cont_500_p_scaffold_7467
Species: Rhizobium sp. YS-1r (66.67%)
6 5370 bp 58.03 3.27 99.78
scnpilot_cont_500_p_scaffold_6324
Phylum: Chloroflexi (66.67%)
6 6206 bp 50.42 4.88 86.77
scnpilot_cont_500_p_scaffold_12744
Domain: Bacteria (83.33%)
6 5477 bp 55.23 4.30 86.27
scnpilot_cont_500_p_scaffold_7478
Domain: Bacteria (66.67%)
6 6201 bp 54.51 5.47 83.65
scnpilot_cont_500_p_scaffold_6083
Domain: Bacteria (66.67%)
6 7681 bp 50.19 4.65 84.91
scnpilot_cont_500_p_scaffold_6854
Domain: Bacteria (100%)
6 5754 bp 55.70 4.43 92.18
scnpilot_cont_500_p_scaffold_6090
Domain: Bacteria (66.67%)
6 6410 bp 55.40 3.39 86.26
Displaying items 451-500 of 660 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.