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SCNPILOT_CONT_500_P_Legionella_38_3_partial

SCNPILOT_CONT_500_P_Gammaproteobacteria_38_3
In projects: SCNPILOT_CONT_500_P

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_p_UNK

Properties

Avg. coverage: 3.36 Longest contig: 36.22 Kbp Bin length: 3.60 Mbp GC content: 38.44 %
Contigs count: 450 Features count: 3553 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 32 / 55 MC: 2 BSCG 33 / 51 MC: 3 ASCG 11 / 38 MC: 2

Description

highly fragmented, from ESOM

Displaying items 51-100 of 450 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_3132
Genus: Legionella (100%)
12 11290 bp 36.32 3.19 77.03
scnpilot_cont_500_p_scaffold_3905
Genus: Legionella (91.67%)
12 9459 bp 38.67 3.24 94.07
scnpilot_cont_500_p_scaffold_3936
Class: Gammaproteobacteria (75%)
12 9398 bp 42.17 3.43 86.73
scnpilot_cont_500_p_scaffold_2766
Class: Gammaproteobacteria (75%)
12 12356 bp 39.77 4.08 90.90
scnpilot_cont_500_p_scaffold_5394
Domain: Bacteria (50%)
12 7143 bp 35.91 3.34 79.25
scnpilot_cont_500_p_scaffold_3733
Domain: Bacteria (50%)
12 9805 bp 36.33 3.32 87.08
scnpilot_cont_500_p_scaffold_3234
Species: Legionella longbeachae (54.55%)
11 11054 bp 40.52 3.41 93.90
scnpilot_cont_500_p_scaffold_3760
Class: Gammaproteobacteria (72.73%)
11 9751 bp 41.22 3.58 83.04
scnpilot_cont_500_p_scaffold_5187
Class: Gammaproteobacteria (54.55%)
11 12291 bp 38.69 2.98 89.80
scnpilot_cont_500_p_scaffold_3276
Phylum: Proteobacteria (63.64%)
11 10911 bp 41.11 3.52 85.10
scnpilot_cont_500_p_scaffold_8668
Phylum: Proteobacteria (72.73%)
11 7536 bp 35.81 3.32 91.36
scnpilot_cont_500_p_scaffold_4273
Domain: Bacteria (54.55%)
11 8763 bp 38.58 3.49 84.39
scnpilot_cont_500_p_scaffold_2618
Species: Legionella longbeachae (54.55%)
11 12852 bp 37.97 3.14 92.39
scnpilot_cont_500_p_scaffold_4547
Species: Legionella longbeachae (72.73%)
11 8319 bp 38.30 3.21 88.46
scnpilot_cont_500_p_scaffold_4578 11 8252 bp 37.26 3.94 89.36
scnpilot_cont_500_p_scaffold_4089
Phylum: Proteobacteria (54.55%)
11 9058 bp 41.05 3.41 83.76
scnpilot_cont_500_p_scaffold_5085
Phylum: Proteobacteria (63.64%)
11 7532 bp 38.33 2.79 89.14
scnpilot_cont_500_p_scaffold_6908
Genus: Acinetobacter (90.91%)
11 5713 bp 30.26 2.52 67.48
scnpilot_cont_500_p_scaffold_2982
Class: Gammaproteobacteria (72.73%)
11 11712 bp 40.96 3.27 90.32
scnpilot_cont_500_p_scaffold_4650
Domain: Bacteria (63.64%)
11 8859 bp 35.32 3.66 90.48
scnpilot_cont_500_p_scaffold_2757
Genus: Legionella (63.64%)
11 12380 bp 40.32 3.32 91.91
scnpilot_cont_500_p_scaffold_4947
Species: Legionella longbeachae (72.73%)
11 7703 bp 38.82 3.49 80.50
scnpilot_cont_500_p_scaffold_5671
Domain: Bacteria (81.82%)
11 9778 bp 36.50 3.76 80.11
scnpilot_cont_500_p_scaffold_2809
Phylum: Proteobacteria (60%)
10 13305 bp 41.20 3.56 88.57
scnpilot_cont_500_p_scaffold_4977
Species: Legionella longbeachae (60%)
10 7661 bp 36.18 2.96 82.43
scnpilot_cont_500_p_scaffold_3763
Species: Legionella longbeachae (80%)
10 9741 bp 42.35 2.91 97.69
scnpilot_cont_500_p_scaffold_6754
Domain: Bacteria (60%)
10 5829 bp 39.29 3.60 74.88
scnpilot_cont_500_p_scaffold_3268
Domain: Bacteria (80%)
10 10930 bp 36.94 3.98 86.93
scnpilot_cont_500_p_scaffold_3275
Species: Legionella longbeachae (70%)
10 10918 bp 40.20 2.90 88.84
scnpilot_cont_500_p_scaffold_4506
Domain: Bacteria (90%)
10 8372 bp 38.90 3.62 92.27
scnpilot_cont_500_p_scaffold_6525
Class: Gammaproteobacteria (50%)
10 6027 bp 37.55 3.61 93.53
scnpilot_cont_500_p_scaffold_4018
Genus: Legionella (80%)
10 9225 bp 37.75 2.89 93.98
scnpilot_cont_500_p_scaffold_4531
Domain: Bacteria (60%)
10 8346 bp 39.38 3.59 85.23
scnpilot_cont_500_p_scaffold_5763
Class: Gammaproteobacteria (60%)
10 6761 bp 42.42 2.75 93.54
scnpilot_cont_500_p_scaffold_3069
Species: Legionella pneumophila (100%)
10 11456 bp 43.06 3.95 100.43
scnpilot_cont_500_p_scaffold_3328
Domain: Bacteria (80%)
10 10774 bp 39.02 3.70 90.83
scnpilot_cont_500_p_scaffold_4068
Domain: Bacteria (60%)
10 9112 bp 38.22 3.61 89.22
scnpilot_cont_500_p_scaffold_5299
Domain: Bacteria (60%)
10 7269 bp 35.93 2.58 60.88
scnpilot_cont_500_p_scaffold_3372
Genus: Legionella (60%)
10 10664 bp 37.81 2.81 90.14
scnpilot_cont_500_p_scaffold_9821
Class: Gammaproteobacteria (50%)
10 9835 bp 38.47 3.54 90.75
scnpilot_cont_500_p_scaffold_5058
Domain: Bacteria (50%)
10 7556 bp 38.47 3.10 90.56
scnpilot_cont_500_p_scaffold_6371
Domain: Bacteria (50%)
10 6160 bp 36.10 3.46 86.20
scnpilot_cont_500_p_scaffold_3899
Class: Gammaproteobacteria (90%)
10 10316 bp 41.52 3.30 89.34
scnpilot_cont_500_p_scaffold_7520
Species: Legionella longbeachae (70%)
10 5337 bp 37.19 2.98 89.04
scnpilot_cont_500_p_scaffold_3392
Domain: Bacteria (50%)
10 10627 bp 39.55 3.77 80.77
scnpilot_cont_500_p_scaffold_3909
Domain: Bacteria (60%)
10 9452 bp 37.06 3.57 84.11
scnpilot_cont_500_p_scaffold_3667 10 9972 bp 36.12 3.02 85.98
scnpilot_cont_500_p_scaffold_3930
Species: Legionella longbeachae (50%)
10 9409 bp 37.95 2.66 88.19
scnpilot_cont_500_p_scaffold_2988
Domain: Bacteria (50%)
10 11683 bp 36.86 3.30 86.46
scnpilot_cont_500_p_scaffold_3689
Order: Enterobacteriales (80%)
10 9915 bp 35.75 8.71 73.92
Displaying items 51-100 of 450 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.