ggKbase home page
Advanced Search
Search Help

SCNPILOT_CONT_500_P_Legionella_38_3_partial

SCNPILOT_CONT_500_P_Gammaproteobacteria_38_3
In projects: SCNPILOT_CONT_500_P

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_p_UNK

Properties

Avg. coverage: 3.36 Longest contig: 36.22 Kbp Bin length: 3.60 Mbp GC content: 38.44 %
Contigs count: 450 Features count: 3553 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 32 / 55 MC: 2 BSCG 33 / 51 MC: 3 ASCG 11 / 38 MC: 2

Description

highly fragmented, from ESOM

Displaying items 151-200 of 450 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_7618
Species: Legionella longbeachae (85.71%)
7 7311 bp 40.49 3.14 91.34
scnpilot_cont_500_p_scaffold_6194
Genus: Sphingobacterium (100%)
5 6317 bp 40.13 2.49 91.18
scnpilot_cont_500_p_scaffold_6234
Domain: Bacteria (80%)
5 6285 bp 36.40 2.98 91.17
scnpilot_cont_500_p_scaffold_5640
Genus: Legionella (85.71%)
7 6873 bp 37.16 3.47 91.14
scnpilot_cont_500_p_scaffold_5154
Species: Legionella hackeliae (62.5%)
8 7438 bp 38.33 3.19 91.11
scnpilot_cont_500_p_scaffold_6121
Species: Legionella longbeachae (66.67%)
6 6385 bp 37.09 3.41 91.06
scnpilot_cont_500_p_scaffold_6205
Phylum: Proteobacteria (62.5%)
8 6306 bp 37.92 3.12 91.06
scnpilot_cont_500_p_scaffold_7403
Phylum: Proteobacteria (83.33%)
6 5410 bp 39.56 3.38 91.05
scnpilot_cont_500_p_scaffold_6756
Species: Acinetobacter sp. ANC 3862 (60%)
5 5828 bp 38.01 2.19 91.01
scnpilot_cont_500_p_scaffold_7972
Genus: Legionella (80%)
5 5100 bp 40.31 3.44 91.00
scnpilot_cont_500_p_scaffold_5955
Genus: Acinetobacter (100%)
8 6560 bp 38.25 2.01 90.96
scnpilot_cont_500_p_scaffold_4903
Phylum: Proteobacteria (80%)
5 7767 bp 36.45 3.67 90.92
scnpilot_cont_500_p_scaffold_2766
Class: Gammaproteobacteria (75%)
12 12356 bp 39.77 4.08 90.90
scnpilot_cont_500_p_scaffold_6728
Species: Legionella longbeachae (100%)
4 5849 bp 38.86 3.31 90.84
scnpilot_cont_500_p_scaffold_3328
Domain: Bacteria (80%)
10 10774 bp 39.02 3.70 90.83
scnpilot_cont_500_p_scaffold_8066
Species: Legionella longbeachae (83.33%)
6 5047 bp 36.28 2.67 90.83
scnpilot_cont_500_p_scaffold_3035
Species: Legionella longbeachae (58.33%)
12 11551 bp 41.08 2.92 90.80
scnpilot_cont_500_p_scaffold_9821
Class: Gammaproteobacteria (50%)
10 9835 bp 38.47 3.54 90.75
scnpilot_cont_500_p_scaffold_2858 7 12072 bp 36.57 3.74 90.73
scnpilot_cont_500_p_scaffold_5596
Species: Legionella longbeachae (50%)
6 6923 bp 38.81 2.99 90.70
scnpilot_cont_500_p_scaffold_6336
Species: Legionella longbeachae (75%)
4 6190 bp 41.11 2.52 90.68
scnpilot_cont_500_p_scaffold_5058
Domain: Bacteria (50%)
10 7556 bp 38.47 3.10 90.56
scnpilot_cont_500_p_scaffold_7294
Genus: Legionella (83.33%)
6 5466 bp 38.75 3.49 90.56
scnpilot_cont_500_p_scaffold_6450
Class: Gammaproteobacteria (60%)
5 6089 bp 38.59 3.28 90.56
scnpilot_cont_500_p_scaffold_4650
Domain: Bacteria (63.64%)
11 8859 bp 35.32 3.66 90.48
scnpilot_cont_500_p_scaffold_6881
Class: Gammaproteobacteria (60%)
5 5730 bp 37.61 3.74 90.47
scnpilot_cont_500_p_scaffold_5337
Phylum: Proteobacteria (50%)
8 7204 bp 34.74 2.79 90.45
scnpilot_cont_500_p_scaffold_6691
Class: Gammaproteobacteria (66.67%)
6 5879 bp 39.85 3.01 90.37
scnpilot_cont_500_p_scaffold_5977
Species: Acinetobacter sp. ANC 3862 (71.43%)
7 6538 bp 37.37 2.68 90.35
scnpilot_cont_500_p_scaffold_5923
Genus: Legionella (75%)
8 6586 bp 41.19 3.92 90.33
scnpilot_cont_500_p_scaffold_2982
Class: Gammaproteobacteria (72.73%)
11 11712 bp 40.96 3.27 90.32
scnpilot_cont_500_p_scaffold_7351
Domain: Bacteria (75%)
4 5435 bp 37.02 3.12 90.25
scnpilot_cont_500_p_scaffold_1884
Class: Gammaproteobacteria (53.33%)
15 16719 bp 40.73 3.41 90.20
scnpilot_cont_500_p_scaffold_3372
Genus: Legionella (60%)
10 10664 bp 37.81 2.81 90.14
scnpilot_cont_500_p_scaffold_3983
Class: Gammaproteobacteria (75%)
8 9285 bp 41.82 3.05 90.11
scnpilot_cont_500_p_scaffold_7811
Class: Gammaproteobacteria (75%)
4 5181 bp 39.34 3.88 90.10
scnpilot_cont_500_p_scaffold_3463
Class: Gammaproteobacteria (57.14%)
7 10429 bp 38.11 3.35 90.09
scnpilot_cont_500_p_scaffold_2532
Class: Gammaproteobacteria (56.25%)
16 13155 bp 41.16 3.33 90.08
scnpilot_cont_500_p_scaffold_1627
Class: Gammaproteobacteria (69.23%)
13 17612 bp 39.40 3.67 90.06
scnpilot_cont_500_p_scaffold_7654
Species: Legionella longbeachae (83.33%)
6 5267 bp 41.09 3.56 90.05
scnpilot_cont_500_p_scaffold_3580
Class: Gammaproteobacteria (50%)
8 10169 bp 38.04 3.60 90.04
scnpilot_cont_500_p_scaffold_6834
Phylum: Proteobacteria (60%)
5 5771 bp 36.30 3.27 90.04
scnpilot_cont_500_p_scaffold_2916
Class: Gammaproteobacteria (76.92%)
13 11912 bp 39.10 3.48 90.01
scnpilot_cont_500_p_scaffold_5442
Class: Gammaproteobacteria (75%)
4 7083 bp 41.08 2.86 90.00
scnpilot_cont_500_p_scaffold_7577
Class: Gammaproteobacteria (60%)
5 5307 bp 40.14 2.63 89.99
scnpilot_cont_500_p_scaffold_3391
Domain: Bacteria (53.85%)
13 10628 bp 36.32 3.88 89.96
scnpilot_cont_500_p_scaffold_7713
Species: Legionella longbeachae (85.71%)
7 5230 bp 39.73 2.95 89.94
scnpilot_cont_500_p_scaffold_7537
Species: Legionella longbeachae (60%)
5 5324 bp 38.17 3.47 89.93
scnpilot_cont_500_p_scaffold_6476
Species: Legionella longbeachae (80%)
5 6072 bp 42.57 3.09 89.87
scnpilot_cont_500_p_scaffold_5649
Class: Gammaproteobacteria (70%)
10 6867 bp 37.06 2.58 89.82
Displaying items 151-200 of 450 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.