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SCNPILOT_CONT_500_P_Eukaryote_47_6

SCNPILOT_CONT_500_P_unknown_47_6
In projects: SCNPILOT_CONT_500_P

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_cont_500_p_UNK

Properties

Avg. coverage: 5.73 Longest contig: 39.20 Kbp Bin length: 3.72 Mbp GC content: 46.85 %
Contigs count: 500 Features count: 4726 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 0 / 55 BSCG 0 / 51 ASCG 3 / 38 MC: 1

Description

from ESOM

Displaying items 451-500 of 500 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_7758 5 5210 bp 54.43 2.88 78.20
scnpilot_cont_500_p_scaffold_6871 5 5738 bp 49.01 3.37 66.82
scnpilot_cont_500_p_scaffold_7526 5 5331 bp 48.06 3.63 59.76
scnpilot_cont_500_p_scaffold_11914 5 7558 bp 53.65 6.03 70.46
scnpilot_cont_500_p_scaffold_7283 5 5474 bp 43.81 3.43 63.03
scnpilot_cont_500_p_scaffold_9606 5 5073 bp 44.96 3.43 51.92
scnpilot_cont_500_p_scaffold_6404 5 6127 bp 50.79 2.86 47.49
scnpilot_cont_500_p_scaffold_8032 5 5568 bp 45.76 10.59 61.37
scnpilot_cont_500_p_scaffold_13978 5 5013 bp 48.02 4.10 78.64
scnpilot_cont_500_p_scaffold_7562 5 5313 bp 46.81 2.99 44.44
scnpilot_cont_500_p_scaffold_7822 5 5174 bp 45.86 3.07 72.42
scnpilot_cont_500_p_scaffold_6431 5 6103 bp 38.96 2.78 44.68
scnpilot_cont_500_p_scaffold_6439 5 6097 bp 51.50 5.36 69.33
scnpilot_cont_500_p_scaffold_13233 5 6376 bp 48.48 3.39 38.63
scnpilot_cont_500_p_scaffold_8063 5 5049 bp 41.08 3.89 44.39
scnpilot_cont_500_p_scaffold_6705 5 5871 bp 46.67 3.55 42.67
scnpilot_cont_500_p_scaffold_12368 5 5343 bp 49.05 4.15 46.21
scnpilot_cont_500_p_scaffold_8092
Phylum: Proteobacteria (50%)
4 5034 bp 49.80 3.22 54.89
scnpilot_cont_500_p_scaffold_7892 4 5149 bp 43.83 3.15 24.59
scnpilot_cont_500_p_scaffold_7384 4 5419 bp 48.79 3.10 55.91
scnpilot_cont_500_p_scaffold_6537 4 6016 bp 52.09 3.34 91.41
scnpilot_cont_500_p_scaffold_13079
Species: Acanthamoeba castellanii (50%)
4 5223 bp 49.84 2.93 78.17
scnpilot_cont_500_p_scaffold_6823 4 5781 bp 42.66 4.96 31.19
scnpilot_cont_500_p_scaffold_9015 4 7925 bp 47.04 4.85 29.41
scnpilot_cont_500_p_scaffold_7479 4 5365 bp 49.45 3.49 67.72
scnpilot_cont_500_p_scaffold_7997 4 5085 bp 49.52 4.75 84.13
scnpilot_cont_500_p_scaffold_7746 4 5213 bp 55.78 3.37 81.78
scnpilot_cont_500_p_scaffold_7242
Domain: Metazoa (50%)
4 5493 bp 47.37 3.11 57.89
scnpilot_cont_500_p_scaffold_6106 4 6399 bp 41.48 5.81 95.45
scnpilot_cont_500_p_scaffold_24101
Domain: Eukaryota (50%)
4 5053 bp 45.60 3.65 37.28
scnpilot_cont_500_p_scaffold_6134
Domain: Eukaryota (50%)
4 6370 bp 48.48 4.14 41.82
scnpilot_cont_500_p_scaffold_7026 4 5637 bp 50.20 3.06 54.55
scnpilot_cont_500_p_scaffold_8024 4 5068 bp 46.74 3.46 37.59
scnpilot_cont_500_p_scaffold_7098 4 5593 bp 49.06 5.36 52.30
scnpilot_cont_500_p_scaffold_6723
Domain: Bacteria (50%)
4 5854 bp 51.09 3.18 77.13
scnpilot_cont_500_p_scaffold_7370 3 5425 bp 50.60 4.92 74.32
scnpilot_cont_500_p_scaffold_8124 3 5019 bp 38.69 3.14 17.27
scnpilot_cont_500_p_scaffold_8126 3 5017 bp 43.83 3.35 52.20
scnpilot_cont_500_p_scaffold_6779 3 5812 bp 50.81 5.81 57.55
scnpilot_cont_500_p_scaffold_9783
Class: Actinobacteria (66.67%)
3 5069 bp 57.76 31.96 9.41
scnpilot_cont_500_p_scaffold_3379 3 11689 bp 54.97 3.09 99.56
scnpilot_cont_500_p_scaffold_7295
Species: Clostridium sp. BL8 (66.67%)
3 5465 bp 46.66 3.76 8.45
scnpilot_cont_500_p_scaffold_4648 3 8138 bp 52.03 5.79 65.88
scnpilot_cont_500_p_scaffold_7332
Species: Acanthamoeba castellanii (66.67%)
3 5961 bp 49.49 4.98 75.19
scnpilot_cont_500_p_scaffold_6701 3 5873 bp 51.52 2.81 65.33
scnpilot_cont_500_p_scaffold_4990
Species: Aurantimonas manganoxydans (50%)
2 7646 bp 55.45 5.38 58.38
scnpilot_cont_500_p_scaffold_7970 2 5101 bp 46.15 3.12 76.75
scnpilot_cont_500_p_scaffold_7974
Species: Bacillus cereus (50%)
2 5099 bp 47.30 2.82 61.13
scnpilot_cont_500_p_scaffold_7511
Species: Rhizopus delemar (100%)
1 5342 bp 45.21 15.86 95.64
scnpilot_cont_500_p_scaffold_7848 1 5166 bp 40.69 2.96 28.92
Displaying items 451-500 of 500 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.