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SCNpilot_cont_750_bf_scaffold_590

Search features with annotation key words

Displaying items 31-60 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_590_31
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37353..37976)
DNA (624bp) protein (208aa)
Transcriptional regulator, TetR family n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q212P8_RHOPB
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABD88638.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_590_32
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38126..38905
DNA (780bp) protein (260aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:CCD92990.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CCD92990.1};; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
Enoyl-CoA hydratase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SFL3_9BRAD
enoyl-CoA hydratase
SCNpilot_cont_750_bf_scaffold_590_33
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38966..40465)
DNA (1500bp) protein (500aa)
methylmalonyl-CoA carboxyltransferase n=1 Tax=Afipia birgiae RepID=UPI00031811C7 rbh
Methylmalonyl-CoA carboxyltransferase {ECO:0000313|EMBL:KIZ33022.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
propionyl-CoA carboxylase rbh
SCNpilot_cont_750_bf_scaffold_590_34
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40452..41384)
DNA (933bp) protein (311aa)
Transcriptional regulator n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QAF5_9BRAD
Transcriptional regulator {ECO:0000313|EMBL:KJC58996.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
transcriptional regulator
SCNpilot_cont_750_bf_scaffold_590_35
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41655..41876
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TJL2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE06650.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
biotinylated protein
SCNpilot_cont_750_bf_scaffold_590_36
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42112..44199)
DNA (2088bp) protein (696aa)
CoA-binding n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q134F3_RHOPS
CoA-binding protein {ECO:0000313|EMBL:KIZ39649.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
CoA-binding protein
SCNpilot_cont_750_bf_scaffold_590_37
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44196..44570)
DNA (375bp) protein (125aa)
General L-amino acid transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1I9T4_9BRAD
General L-amino acid transport system permease {ECO:0000313|EMBL:ERF80285.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_590_38
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44567..45703)
DNA (1137bp) protein (379aa)
thiolase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035E34CB rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY51267.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_590_39
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45854..47020)
DNA (1167bp) protein (389aa)
Putative acyl-CoA dehydrogenase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z9M4_9BRAD
putative acyl-CoA dehydrogenase
Putative acyl-CoA dehydrogenase {ECO:0000313|EMBL:BAM90478.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_750_bf_scaffold_590_40
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47023..48243)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DJV5_BRAJP rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY51268.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_590_41
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48492..50009)
DNA (1518bp) protein (506aa)
AMP-dependent synthetase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036B5AB1
Bradyrhizobium elkanii strain UASWS1015 Contig187, whole genome shotgun sequence {ECO:0000313|EMBL:KIU43199.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
AMP-dependent synthetase and ligase
SCNpilot_cont_750_bf_scaffold_590_42
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50037..51206)
DNA (1170bp) protein (390aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KIZ39645.1}; EC=2.3.1.9 {ECO:0000313|EMBL:KIZ39645.1};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] rbh
3-ketoacyl-CoA thiolase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N474_RHOPA rbh
SCNpilot_cont_750_bf_scaffold_590_43
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(51562..52593)
DNA (1032bp) protein (344aa)
30S ribosomal protein S14 n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1ID30_9BRAD
NAD-dependent epimerase {ECO:0000313|EMBL:KJC51138.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
NAD-dependent epimerase/dehydratase
SCNpilot_cont_750_bf_scaffold_590_44
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52671..53582)
DNA (912bp) protein (304aa)
Putative ABC transporter permease protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TJM2_9BRAD
Putative ABC transporter permease protein {ECO:0000313|EMBL:CCE06660.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
binding-protein-dependent transporter inner membrane component; K02026 multiple sugar transport system permease protein
SCNpilot_cont_750_bf_scaffold_590_45
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53575..54537)
DNA (963bp) protein (321aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q210K6_RHOPB
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABD89180.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_590_46
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54650..55972)
DNA (1323bp) protein (441aa)
Putative ABC transporter periplasmic-binding protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TJM4_9BRAD
Putative ABC transporter periplasmic-binding protein {ECO:0000313|EMBL:CCE06662.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
ABC transporter substrate-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_cont_750_bf_scaffold_590_47
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56026..57090)
DNA (1065bp) protein (355aa)
ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TJM5_9BRAD
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCE06663.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
ABC transporter ATP-binding protein
SCNpilot_cont_750_bf_scaffold_590_48
unknown

Not on your lists

comp(57071..57190)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_590_49
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57278..58309
DNA (1032bp) protein (344aa)
Gluconate utilization system transcriptional repressor n=2 Tax=Bradyrhizobiaceae RepID=F7QL17_9BRAD
Gluconate utilization system transcriptional repressor {ECO:0000313|EMBL:EGP07670.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
transcriptional regulator; K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
SCNpilot_cont_750_bf_scaffold_590_50
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58504..60324
DNA (1821bp) protein (607aa)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:CCD85497.1}; EC=4.2.1.9 {ECO:0000313|EMBL:CCD85497.1};; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
ilvD1; dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RU70_9BRAD
SCNpilot_cont_750_bf_scaffold_590_51
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60516..61250
DNA (735bp) protein (245aa)
oxidoreductase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B34A5F rbh
Oxidoreductase {ECO:0000313|EMBL:KIZ36794.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_cont_750_bf_scaffold_590_52
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61368..61844
DNA (477bp) protein (159aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q210K1_RHOPB
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KIZ36793.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_750_bf_scaffold_590_53
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61905..62114
DNA (210bp) protein (70aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
3-oxoacyl-ACP reductase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037388B7
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KJC51145.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_750_bf_scaffold_590_54
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62170..62964)
DNA (795bp) protein (265aa)
TonB like protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXE8_9BRAD
TonB like protein {ECO:0000313|EMBL:EAQ35339.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
TonB-like
SCNpilot_cont_750_bf_scaffold_590_55
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63156..63629)
DNA (474bp) protein (158aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q134D3_RHOPS
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:ABE40556.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_750_bf_scaffold_590_56
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63633..64577)
DNA (945bp) protein (315aa)
Outer membrane transport energization protein ExbB n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QN60_NITHX
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
Outer membrane transport energization protein ExbB {ECO:0000313|EMBL:ABE62337.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_590_57
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64574..65263)
DNA (690bp) protein (230aa)
hydroxylase; K07336 PKHD-type hydroxylase [EC:1.14.11.-]
PKHD-type hydroxylase Nham_1514 {ECO:0000255|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000255|HAMAP-Rule:MF_00657};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
PKHD-type hydroxylase Nham_1514 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Y1514_NITHX
SCNpilot_cont_750_bf_scaffold_590_58
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65287..67656)
DNA (2370bp) protein (790aa)
TonB-dependent siderophore receptor n=2 Tax=Oligotropha carboxidovorans RepID=F8BHS6_OLICM
TonB-dependent siderophore receptor {ECO:0000313|EMBL:AEI06062.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_750_bf_scaffold_590_59
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67924..68163)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QN63_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62334.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_590_60
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68303..68764)
DNA (462bp) protein (154aa)
Transcriptional regulator, MarR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QN64_NITHX
MarR family transcriptional regulator {ECO:0000313|EMBL:KJC59024.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
MarR family transcriptional regulator
Displaying items 31-60 of 75 in total

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