ggKbase | organisms

Consensus taxonomy: Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_cont_750_bf_UNK

Properties

Avg. coverage: 10.19 Longest contig: 18.10 Kbp Bin length: 1.93 Mbp GC content: 67.67 %

Contigs count: 779 Features count: 2482 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 5 / 55 BSCG 11 / 51 MC: 2 ASCG 7 / 38 MC: 1

Description

missing many small contigs, did not add them.

Displaying items 501-550 of 779 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_cont_750_bf_scaffold_26092 Species: RIFOXYA1_FULL_Rhodanobacter_67_6_curated (50%)	2	1534 bp	68.25	7.99	98.76
SCNpilot_cont_750_bf_scaffold_32516 Species: Rhodanobacter fulvus (50%)	2	1269 bp	63.44	1.97	100.47
SCNpilot_cont_750_bf_scaffold_27685 Species: Rhodanobacter thiooxydans (50%)	2	1458 bp	66.74	38.75	91.56
SCNpilot_cont_750_bf_scaffold_28326 Species: Rhodanobacter denitrificans (100%)	2	1427 bp	65.66	10.69	99.86
SCNpilot_cont_750_bf_scaffold_40704 Species: RIFOXYA1_FULL_Rhodanobacter_67_6_curated (50%)	2	1035 bp	67.54	5.07	99.42
SCNpilot_cont_750_bf_scaffold_32520 Species: Dyella japonica (50%)	2	1269 bp	63.04	2.76	80.85
SCNpilot_cont_750_bf_scaffold_32777 Species: Dyella jiangningensis (50%)	2	1260 bp	68.65	5.36	89.05
SCNpilot_cont_750_bf_scaffold_25938 Species: Delftia acidovorans (50%)	2	1542 bp	64.85	4.70	80.35
SCNpilot_cont_750_bf_scaffold_20894 Species: Lysobacter concretionis (100%)	2	1859 bp	63.53	3.77	99.41
SCNpilot_cont_750_bf_scaffold_21447 Species: Rhodanobacter thiooxydans (50%)	2	1817 bp	68.46	9.91	94.94
SCNpilot_cont_750_bf_scaffold_20640 Species: Rhodanobacter fulvus (50%)	2	1879 bp	69.13	6.12	91.33
SCNpilot_cont_750_bf_scaffold_38918 Species: Rhodanobacter thiooxydans (50%)	2	1084 bp	65.96	9.46	82.47
SCNpilot_cont_750_bf_scaffold_25174 Species: Rhodanobacter fulvus (50%)	2	1580 bp	66.14	11.87	100.06
SCNpilot_cont_750_bf_scaffold_24265 Species: Xanthomonas sacchari (50%)	2	1630 bp	65.83	7.98	93.50
SCNpilot_cont_750_bf_scaffold_35896 Species: RIFOXYA1_FULL_Rhodanobacter_67_6_curated (50%)	2	1169 bp	72.20	11.55	100.09
SCNpilot_cont_750_bf_scaffold_19547 Species: Rhodanobacter denitrificans (50%)	2	1971 bp	64.64	10.02	87.52
SCNpilot_cont_750_bf_scaffold_26364 Species: Rhodanobacter spathiphylli (50%)	2	1520 bp	70.46	8.88	88.62
SCNpilot_cont_750_bf_scaffold_40975 Species: Rhodanobacter thiooxydans (50%)	2	1028 bp	68.19	9.48	78.21
SCNpilot_cont_750_bf_scaffold_27704 Species: Rhodanobacter spathiphylli (50%)	2	1457 bp	69.39	7.38	100.69
SCNpilot_cont_750_bf_scaffold_31097 Species: RIFOXYA1_FULL_Rhodanobacter_67_6_curated (50%)	2	1318 bp	69.27	128.79	99.47
SCNpilot_cont_750_bf_scaffold_36050 Species: Rhodanobacter spathiphylli (100%)	2	1165 bp	68.33	9.87	93.73
SCNpilot_cont_750_bf_scaffold_25445 Species: Rhodanobacter thiooxydans (50%)	2	1566 bp	67.56	12.29	85.82
SCNpilot_cont_750_bf_scaffold_25447 Species: Burkholderia fungorum (50%)	2	1566 bp	61.56	2.71	86.97
SCNpilot_cont_750_bf_scaffold_36311 Species: Rhodanobacter spathiphylli (100%)	2	1156 bp	67.56	10.38	76.82
SCNpilot_cont_750_bf_scaffold_46590 Species: Rhodanobacter spathiphylli (50%)	2	1707 bp	66.61	7.32	93.50
SCNpilot_cont_750_bf_scaffold_35656 Species: Rhodanobacter denitrificans (50%)	2	1177 bp	67.20	38.66	90.48
SCNpilot_cont_750_bf_scaffold_32544 Species: Pseudoxanthomonas suwonensis (50%)	2	1268 bp	65.14	10.84	92.27
SCNpilot_cont_750_bf_scaffold_19306 Species: Oleiagrimonas soli (50%)	2	1992 bp	68.02	10.42	75.45
SCNpilot_cont_750_bf_scaffold_39595 Species: RIFOXYA1_FULL_Rhodanobacter_67_6_curated (50%)	2	1065 bp	70.42	9.86	97.75
SCNpilot_cont_750_bf_scaffold_35916 Species: Rhodanobacter spathiphylli (100%)	2	1169 bp	66.64	5.13	100.09
SCNpilot_cont_750_bf_scaffold_41285 Species: Rhodanobacter spathiphylli (50%)	2	1020 bp	66.76	78.43	92.65
SCNpilot_cont_750_bf_scaffold_34590 Species: Rhodanobacter spathiphylli (50%)	2	1833 bp	70.98	5.73	82.82
SCNpilot_cont_750_bf_scaffold_17961 Species: Dyella jiangningensis (50%)	2	2120 bp	66.65	5.31	100.33
SCNpilot_cont_750_bf_scaffold_33462 Species: Rhodanobacter spathiphylli (50%)	2	1241 bp	66.48	7.86	100.08
SCNpilot_cont_750_bf_scaffold_33207 Species: Rhodanobacter denitrificans (50%)	2	1248 bp	73.32	12.62	98.08
SCNpilot_cont_750_bf_scaffold_9321 Species: Luteibacter yeojuensis (50%)	2	3516 bp	69.94	8.89	93.77
SCNpilot_cont_750_bf_scaffold_46818 Species: Rhodanobacter spathiphylli (50%)	2	1503 bp	67.86	9.81	80.64
SCNpilot_cont_750_bf_scaffold_37280 Species: Rhodanobacter spathiphylli (100%)	2	1131 bp	68.08	11.49	98.94
SCNpilot_cont_750_bf_scaffold_15909 Species: Rhodanobacter thiooxydans (50%)	2	2352 bp	71.00	7.23	93.49
SCNpilot_cont_750_bf_scaffold_25723 Species: Rhodanobacter fulvus (50%)	2	1553 bp	69.48	8.21	87.31
SCNpilot_cont_750_bf_scaffold_20934 Species: Rhodanobacter spathiphylli (50%)	2	1857 bp	65.54	8.48	60.26
SCNpilot_cont_750_bf_scaffold_19836 Species: Rhodanobacter fulvus (100%)	2	1943 bp	66.60	6.82	94.03
SCNpilot_cont_750_bf_scaffold_22024 Species: Rhodanobacter thiooxydans (100%)	2	1775 bp	70.25	8.87	90.25
SCNpilot_cont_750_bf_scaffold_29704 Species: Dyella japonica (100%)	2	1369 bp	65.23	4.57	63.11
SCNpilot_cont_750_bf_scaffold_32310 Species: Rhodanobacter denitrificans (50%)	2	1275 bp	66.51	9.61	90.82
SCNpilot_cont_750_bf_scaffold_9585 Species: RIFOXYA1_FULL_Rhodanobacter_67_6_curated (50%)	2	3452 bp	70.86	30.85	97.16
SCNpilot_cont_750_bf_scaffold_35168 Species: Rhodanobacter fulvus (100%)	2	1190 bp	67.82	6.72	100.08
SCNpilot_cont_750_bf_scaffold_28122 Species: Rhodanobacter thiooxydans (50%)	2	1436 bp	70.26	11.84	74.16
SCNpilot_cont_750_bf_scaffold_36082 Species: Rhodanobacter spathiphylli (50%)	2	1163 bp	69.82	9.89	76.35
SCNpilot_cont_750_bf_scaffold_28379 Species: Rhodanobacter spathiphylli (50%)	2	1424 bp	67.70	9.48	94.59

Displaying items 501-550 of 779 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27) and add all its contigs / scaffolds to the organism you choose below

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Other organism

SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

SCNPILOT_CONT_750_BF_Rhodanobacter_68_10

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

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