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SCNPILOT_CONT_300_BF_Sphingomonadales_65_9_partial

SCNPILOT_CONT_750_BF_Sphingomonas_67_4
In projects: SCNPILOT_CONT_750_BF

Consensus taxonomy: Sphingomonas  →  Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_750_bf_UNK

Properties

Avg. coverage: 4.02 Longest contig: 17.26 Kbp Bin length: 3.17 Mbp GC content: 66.91 %
Contigs count: 991 Features count: 3851 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 17 / 55 MC: 1 BSCG 17 / 51 MC: 1 ASCG 9 / 38 MC: 1
Displaying items 651-700 of 991 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_750_bf_scaffold_20569
Species: Sphingomonas paucimobilis (50%)
2 1885 bp 67.27 6.37 95.33
SCNpilot_cont_750_bf_scaffold_14283
Species: Sphingobium sp. YBL2 (100%)
2 2561 bp 70.21 4.49 98.05
SCNpilot_cont_750_bf_scaffold_34497
Species: Novosphingobium subterraneum (50%)
2 1210 bp 67.69 4.34 81.07
SCNpilot_cont_750_bf_scaffold_33622
Species: Sphingomonas taxi (50%)
2 1236 bp 65.45 3.84 89.32
SCNpilot_cont_750_bf_scaffold_34246
Species: Sphingobium sp. YBL2 (50%)
2 1217 bp 60.07 2.88 79.13
SCNpilot_cont_750_bf_scaffold_40134
Species: Novosphingobium malaysiense (50%)
2 1050 bp 58.57 3.10 90.86
SCNpilot_cont_750_bf_scaffold_29089
Species: Sphingomonas taxi (100%)
2 1395 bp 67.17 2.87 100.22
SCNpilot_cont_750_bf_scaffold_32720
Species: Mastigocladus laminosus (50%)
2 1261 bp 68.44 4.56 90.40
SCNpilot_cont_750_bf_scaffold_14035
Species: Sphingomonas wittichii (100%)
2 2598 bp 68.44 3.56 84.53
SCNpilot_cont_750_bf_scaffold_18562
Species: Sphingomonas wittichii (50%)
2 2061 bp 64.63 2.67 98.69
SCNpilot_cont_750_bf_scaffold_30098
Species: Bradyrhizobium sp. STM 3843 (50%)
2 1354 bp 65.51 2.77 42.54
SCNpilot_cont_750_bf_scaffold_26555
Species: Sphingomonas taxi (100%)
2 1510 bp 68.61 2.48 71.32
SCNpilot_cont_750_bf_scaffold_30867
Species: Sphingomonas taxi (50%)
2 1326 bp 66.21 5.84 91.63
SCNpilot_cont_750_bf_scaffold_28788
Species: Sphingomonas sp. RIT328 (50%)
2 1407 bp 62.26 4.26 99.57
SCNpilot_cont_750_bf_scaffold_35580 2 1179 bp 53.69 4.24 100.00
SCNpilot_cont_750_bf_scaffold_22695
Species: Sphingomonas taxi (100%)
2 1729 bp 68.48 3.76 85.19
SCNpilot_cont_750_bf_scaffold_42388
Species: Sphingomonas paucimobilis (50%)
2 1769 bp 63.20 4.38 80.38
SCNpilot_cont_750_bf_scaffold_24722
Species: Sphingomonas taxi (50%)
2 1605 bp 69.10 2.96 98.69
SCNpilot_cont_750_bf_scaffold_33378
Species: Komagataeibacter rhaeticus (50%)
2 1243 bp 65.73 1.81 89.54
SCNpilot_cont_750_bf_scaffold_37448
Species: Sphingobium sp. YBL2 (50%)
2 1126 bp 62.52 1.33 89.25
SCNpilot_cont_750_bf_scaffold_14555
Species: Sphingomonas parapaucimobilis (50%)
2 2519 bp 67.41 3.67 101.95
SCNpilot_cont_750_bf_scaffold_24979
Species: Candidatus Phaeomarinobacter ectocarpi (100%)
2 1590 bp 61.64 5.03 98.68
SCNpilot_cont_750_bf_scaffold_38609
Species: Sphingomonas changbaiensis (50%)
2 1093 bp 64.59 3.66 83.44
SCNpilot_cont_750_bf_scaffold_22445
Species: Sphingomonas sp. Ant20 (50%)
2 1746 bp 70.27 4.30 86.25
SCNpilot_cont_750_bf_scaffold_13534
Species: Sphingomonas taxi (50%)
2 2668 bp 66.42 3.94 84.67
SCNpilot_cont_750_bf_scaffold_24215
Species: Sphingomonas sp. RIT328 (100%)
2 1632 bp 68.57 5.82 99.45
SCNpilot_cont_750_bf_scaffold_32478
Species: Sphingomonas sp. RIT328 (50%)
2 1270 bp 67.64 1.77 90.71
SCNpilot_cont_750_bf_scaffold_25896
Species: Sphingomonas sp. SRS2 (50%)
2 1545 bp 55.60 3.56 88.93
SCNpilot_cont_750_bf_scaffold_27136
Species: Sphingomonas wittichii (100%)
2 1483 bp 69.12 5.73 93.66
SCNpilot_cont_750_bf_scaffold_37457
Species: Devosia sp. DDB001 (50%)
2 1126 bp 66.07 4.22 90.85
SCNpilot_cont_750_bf_scaffold_20341
Species: Novosphingobium nitrogenifigens (50%)
2 1903 bp 66.63 4.86 85.76
SCNpilot_cont_750_bf_scaffold_31555
Species: Sphingobium herbicidovorans (50%)
2 1301 bp 60.80 2.31 100.08
SCNpilot_cont_750_bf_scaffold_30115
Species: Sphingobium lactosutens (50%)
2 1354 bp 72.75 5.35 95.49
SCNpilot_cont_750_bf_scaffold_31557
Species: Sphingomonas sp. WHSC-8 (50%)
2 1301 bp 67.33 4.23 83.01
SCNpilot_cont_750_bf_scaffold_17128
Species: Sphingomonas sp. RIT328 (50%)
2 2211 bp 69.02 4.75 98.24
SCNpilot_cont_750_bf_scaffold_21664
Species: Sphingomonas taxi (100%)
2 1801 bp 64.69 4.72 88.12
SCNpilot_cont_750_bf_scaffold_21665
Species: Methylobacterium extorquens (50%)
2 1801 bp 63.58 3.33 78.29
SCNpilot_cont_750_bf_scaffold_27656
Species: Sphingomonas sp. SKA58 (100%)
2 1460 bp 66.64 1.54 100.48
SCNpilot_cont_750_bf_scaffold_31818
Species: Sphingomonas parapaucimobilis (50%)
2 1292 bp 63.31 3.48 85.91
SCNpilot_cont_750_bf_scaffold_16615
Species: Sphingomonas wittichii (50%)
2 2265 bp 65.70 3.53 84.90
SCNpilot_cont_750_bf_scaffold_13554
Species: Caulobacter segnis (50%)
2 2665 bp 59.70 1.69 56.29
SCNpilot_cont_750_bf_scaffold_26585
Species: Mesorhizobium huakuii (50%)
2 1509 bp 62.56 5.14 48.31
SCNpilot_cont_750_bf_scaffold_34795
Species: Sphingomonas taxi (50%)
2 1200 bp 66.75 4.58 94.50
SCNpilot_cont_750_bf_scaffold_32244
Species: Sphingomonas sp. Ant20 (50%)
2 1278 bp 65.88 3.91 90.38
SCNpilot_cont_750_bf_scaffold_36012
Species: Sphingomonas elodea (50%)
2 1165 bp 66.87 4.72 79.83
SCNpilot_cont_750_bf_scaffold_36524
Species: Sphingomonas sp. RIT328 (50%)
2 1151 bp 64.29 4.34 86.27
SCNpilot_cont_750_bf_scaffold_34029
Species: Sphingomonas sanxanigenens (100%)
2 1224 bp 69.93 4.29 98.04
SCNpilot_cont_750_bf_scaffold_25150
Species: Sphingomonas taxi (50%)
2 1581 bp 65.34 4.90 94.69
SCNpilot_cont_750_bf_scaffold_32246
Species: Mesorhizobium sp. L2C067A000 (50%)
2 1278 bp 60.17 3.33 65.26
SCNpilot_cont_750_bf_scaffold_33921
Species: Sphingomonas parapaucimobilis (50%)
2 1921 bp 63.77 2.47 60.75
Displaying items 651-700 of 991 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.