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SCNPILOT_CONT_300_BF_Sphingomonadales_65_9_partial

SCNPILOT_CONT_750_BF_Sphingomonas_67_4
In projects: SCNPILOT_CONT_750_BF

Consensus taxonomy: Sphingomonas  →  Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_750_bf_UNK

Properties

Avg. coverage: 4.02 Longest contig: 17.26 Kbp Bin length: 3.17 Mbp GC content: 66.91 %
Contigs count: 991 Features count: 3851 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 17 / 55 MC: 1 BSCG 17 / 51 MC: 1 ASCG 9 / 38 MC: 1
Displaying items 801-850 of 991 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_750_bf_scaffold_18702
Species: Sphingopyxis sp. LC363 (50%)
2 2048 bp 65.67 3.91 98.73
SCNpilot_cont_750_bf_scaffold_38999
Species: Sphingomonas taxi (50%)
2 1082 bp 63.96 5.08 85.40
SCNpilot_cont_750_bf_scaffold_36119
Species: Sphingomonas taxi (100%)
2 1162 bp 68.24 4.95 94.23
SCNpilot_cont_750_bf_scaffold_29234
Species: Asticcacaulis excentricus (50%)
2 1389 bp 55.29 3.42 82.94
SCNpilot_cont_750_bf_scaffold_32352
Species: Sphingomonas taxi (100%)
2 1274 bp 65.78 1.96 100.31
SCNpilot_cont_750_bf_scaffold_6364
Species: Sphingomonas sp. WHSC-8 (50%)
2 4494 bp 67.04 3.62 89.19
SCNpilot_cont_750_bf_scaffold_20212
Species: Sphingopyxis sp. LC81 (50%)
2 1912 bp 67.83 5.88 90.69
SCNpilot_cont_750_bf_scaffold_29748
Species: Sphingomonas sanxanigenens (100%)
2 1368 bp 66.15 5.12 89.47
SCNpilot_cont_750_bf_scaffold_19626
Species: Sphingomonas paucimobilis (50%)
2 1963 bp 71.57 4.97 100.10
SCNpilot_cont_750_bf_scaffold_28419
Species: Sphingomonas taxi (50%)
2 1422 bp 67.44 5.98 84.81
SCNpilot_cont_750_bf_scaffold_25771
Species: RHI_Rhodobacterales_62_75 (50%)
2 1551 bp 66.41 5.48 78.53
SCNpilot_cont_750_bf_scaffold_32355
Species: Bradyrhizobium sp. CCGE-LA001 (50%)
2 1274 bp 68.05 3.53 97.02
SCNpilot_cont_750_bf_scaffold_23564
Species: Sphingomonas parapaucimobilis (50%)
2 1671 bp 63.26 4.34 78.64
SCNpilot_cont_750_bf_scaffold_19630
Species: Sphingomonas paucimobilis (50%)
2 1963 bp 61.59 1.66 65.72
SCNpilot_cont_750_bf_scaffold_22329
Species: GWF1_Sphingomonadales_63_6_curated (50%)
2 1754 bp 69.16 3.56 99.89
SCNpilot_cont_750_bf_scaffold_21538
Species: Sphingomonas sp. Ant20 (50%)
2 1811 bp 69.13 3.59 93.93
SCNpilot_cont_750_bf_scaffold_25520
Species: R_Sphingopyxis_65_24 (50%)
2 1563 bp 62.00 2.56 76.01
SCNpilot_cont_750_bf_scaffold_14955
Species: Sphingobium sp. ba1 (50%)
2 2470 bp 67.29 4.66 92.19
SCNpilot_cont_750_bf_scaffold_29499
Species: Sphingomonas taxi (100%)
2 1378 bp 72.42 4.72 100.15
SCNpilot_cont_750_bf_scaffold_28170
Species: Sphingomonas parapaucimobilis (50%)
2 1434 bp 70.15 5.06 92.05
SCNpilot_cont_750_bf_scaffold_47556
Species: Sphingomonas sanxanigenens (50%)
2 1549 bp 66.49 3.07 98.19
SCNpilot_cont_750_bf_scaffold_20990
Species: Sphingomonas sp. WHSC-8 (50%)
2 1853 bp 65.84 4.86 93.74
SCNpilot_cont_750_bf_scaffold_24107
Species: Novosphingobium sp. AP12 (100%)
2 1639 bp 65.10 3.66 98.11
SCNpilot_cont_750_bf_scaffold_24619
Species: Sphingomonas wittichii (100%)
2 1610 bp 66.52 2.48 100.81
SCNpilot_cont_750_bf_scaffold_17524
Species: Sphingomonas paucimobilis (50%)
2 2165 bp 68.18 4.62 100.05
SCNpilot_cont_750_bf_scaffold_23835
Species: Sphingomonas sp. RIT328 (50%)
2 1657 bp 67.47 3.77 98.13
SCNpilot_cont_750_bf_scaffold_36395
Species: Sphingomonas taxi (50%)
2 1155 bp 68.14 4.76 96.88
SCNpilot_cont_750_bf_scaffold_25532
Species: Sphingomonas changbaiensis (50%)
2 1562 bp 67.03 2.56 92.19
SCNpilot_cont_750_bf_scaffold_13175
Species: Sphingobium sp. C100 (50%)
2 2727 bp 62.16 3.21 81.96
SCNpilot_cont_750_bf_scaffold_24879
Species: Sphingomonas parapaucimobilis (50%)
2 1596 bp 64.79 1.88 80.26
SCNpilot_cont_750_bf_scaffold_20231
Species: Sphingomonas sp. Ant20 (50%)
2 1912 bp 62.34 3.01 65.59
SCNpilot_cont_750_bf_scaffold_28439
Species: Sphingomonas taxi (50%)
2 1422 bp 71.59 4.75 101.90
SCNpilot_cont_750_bf_scaffold_19394
Species: Novosphingobium tardaugens (50%)
2 1985 bp 68.61 5.04 100.05
SCNpilot_cont_750_bf_scaffold_35492
Species: Sphingobium sp. C100 (50%)
2 1181 bp 69.77 5.50 100.34
SCNpilot_cont_750_bf_scaffold_41885
Species: Sphingomonas sp. Ant20 (50%)
2 1005 bp 68.36 2.49 99.70
SCNpilot_cont_750_bf_scaffold_31454
Species: BJP_IG2102_Porphyrobacter_62_18 (100%)
2 1304 bp 65.11 4.03 98.47
SCNpilot_cont_750_bf_scaffold_30014
Species: Sphingopyxis sp. LC81 (50%)
2 1358 bp 65.68 3.87 93.00
SCNpilot_cont_750_bf_scaffold_34679
Species: Sphingomonas taxi (50%)
2 1204 bp 65.78 3.95 82.23
SCNpilot_cont_750_bf_scaffold_36155
Species: Sphingobium sp. C100 (50%)
2 1880 bp 64.20 4.92 59.36
SCNpilot_cont_750_bf_scaffold_16507
Species: Novosphingobium sp. Rr 2-17 (50%)
2 2278 bp 66.29 4.06 95.35
SCNpilot_cont_750_bf_scaffold_21567
Species: Stigmatella aurantiaca (50%)
2 1809 bp 60.70 3.32 91.87
SCNpilot_cont_750_bf_scaffold_34429
Species: Sphingomonas sp. MM-1 (50%)
2 1212 bp 64.52 5.98 98.76
SCNpilot_cont_750_bf_scaffold_26221
Species: Beijerinckia indica (100%)
2 1527 bp 60.12 1.96 54.81
SCNpilot_cont_750_bf_scaffold_31717
Species: Sphingomonas taxi (50%)
2 1296 bp 65.74 3.67 87.50
SCNpilot_cont_750_bf_scaffold_31975
Species: RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated (50%)
2 1286 bp 52.26 2.14 84.91
SCNpilot_cont_750_bf_scaffold_40320
Species: Sphingomonas parapaucimobilis (100%)
2 1045 bp 63.73 5.26 97.89
SCNpilot_cont_750_bf_scaffold_23601
Species: Sphingomonas sp. WHSC-8 (50%)
2 1669 bp 67.71 5.09 93.29
SCNpilot_cont_750_bf_scaffold_23857
Species: Sphingobium sp. SYK-6 (50%)
2 1655 bp 65.80 2.11 89.00
SCNpilot_cont_750_bf_scaffold_40836
Species: Caulobacter vibrioides (50%)
2 1031 bp 65.18 4.61 91.37
SCNpilot_cont_750_bf_scaffold_31214
Species: Sphingomonas taxi (50%)
2 1313 bp 69.08 4.95 100.08
Displaying items 801-850 of 991 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.