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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_CONT_750_P_unknown_33_28
In projects: SCNPILOT_CONT_750_P

Consensus taxonomy:

Metagenomic Context

Parent: SCNpilot_cont_750_p_UNK

Properties

Avg. coverage: 27.79 Longest contig: 172.90 Kbp Bin length: 65.87 Mbp GC content: 33.15 %
Contigs count: 12209 Features count: 74989 rRNAs count: 1 tRNAs count: 190

Genome completeness

partial RP 41 / 55 MC: 34 BSCG 20 / 51 MC: 11 ASCG 30 / 38 MC: 21
Displaying items 1-50 of 12209 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
SCNpilot_cont_750_p_scaffold_214 181 172901 bp 32.25 28.90 44.71
SCNpilot_cont_750_p_scaffold_168 164 137836 bp 33.47 29.37 50.99
SCNpilot_cont_750_p_scaffold_250 133 112323 bp 32.74 29.64 48.30
SCNpilot_cont_750_p_scaffold_236 130 110912 bp 32.03 29.43 47.26
SCNpilot_cont_750_p_scaffold_529 130 101901 bp 32.87 29.21 55.21
SCNpilot_cont_750_p_scaffold_320 110 106737 bp 33.35 29.37 56.65
SCNpilot_cont_750_p_scaffold_345 109 82072 bp 34.03 29.43 58.98
SCNpilot_cont_750_p_scaffold_385 105 75312 bp 34.16 29.97 50.64
SCNpilot_cont_750_p_scaffold_376 95 76995 bp 34.00 30.42 49.15
SCNpilot_cont_750_p_scaffold_620 94 70776 bp 33.92 30.37 54.82
SCNpilot_cont_750_p_scaffold_384 94 75364 bp 34.74 30.79 61.23
SCNpilot_cont_750_p_scaffold_445 93 68880 bp 34.72 30.71 56.94
SCNpilot_cont_750_p_scaffold_341 89 83222 bp 32.84 29.45 57.86
SCNpilot_cont_750_p_scaffold_450 85 68504 bp 33.18 28.54 41.95
SCNpilot_cont_750_p_scaffold_481 84 63619 bp 35.83 30.47 45.53
SCNpilot_cont_750_p_scaffold_488 81 63193 bp 32.54 28.06 51.44
SCNpilot_cont_750_p_scaffold_530 80 59645 bp 33.62 30.68 55.59
SCNpilot_cont_750_p_scaffold_547 80 58694 bp 33.23 30.10 53.28
SCNpilot_cont_750_p_scaffold_531 79 59630 bp 34.11 29.89 50.28
SCNpilot_cont_750_p_scaffold_607 77 54513 bp 32.65 28.34 57.93
SCNpilot_cont_750_p_scaffold_589 77 56289 bp 32.39 28.98 54.28
SCNpilot_cont_750_p_scaffold_543 74 58841 bp 34.41 30.30 46.62
SCNpilot_cont_750_p_scaffold_570 74 57406 bp 32.77 29.07 51.73
SCNpilot_cont_750_p_scaffold_513 73 61037 bp 33.26 29.29 44.94
SCNpilot_cont_750_p_scaffold_525 73 60218 bp 33.52 30.32 44.83
SCNpilot_cont_750_p_scaffold_637 72 52409 bp 31.53 28.92 45.96
SCNpilot_cont_750_p_scaffold_371 71 77440 bp 31.76 25.19 72.07
SCNpilot_cont_750_p_scaffold_857
Phylum: Firmicutes (50.7%)
71 40956 bp 36.54 41.67 91.62
SCNpilot_cont_750_p_scaffold_601 70 55276 bp 34.18 28.82 57.58
SCNpilot_cont_750_p_scaffold_572 67 57390 bp 33.28 27.77 67.37
SCNpilot_cont_750_p_scaffold_614 64 54199 bp 33.58 31.08 48.32
SCNpilot_cont_750_p_scaffold_704 64 47386 bp 33.80 29.98 62.46
SCNpilot_cont_750_p_scaffold_718 63 46815 bp 32.28 27.34 62.52
SCNpilot_cont_750_p_scaffold_1134 63 48775 bp 33.92 28.60 63.90
SCNpilot_cont_750_p_scaffold_905 60 39072 bp 33.21 30.00 50.28
SCNpilot_cont_750_p_scaffold_514 60 61018 bp 33.86 29.68 62.33
SCNpilot_cont_750_p_scaffold_630 59 53070 bp 33.34 28.87 59.65
SCNpilot_cont_750_p_scaffold_854
Domain: Metazoa (72.88%)
59 44289 bp 34.60 29.46 70.40
SCNpilot_cont_750_p_scaffold_492 58 63135 bp 32.64 26.89 74.75
SCNpilot_cont_750_p_scaffold_629 57 54953 bp 32.85 29.00 50.97
SCNpilot_cont_750_p_scaffold_519 57 60846 bp 32.67 29.71 47.83
SCNpilot_cont_750_p_scaffold_938 56 48342 bp 35.32 29.28 56.63
SCNpilot_cont_750_p_scaffold_1049 56 35680 bp 33.40 30.35 64.48
SCNpilot_cont_750_p_scaffold_1113 56 43978 bp 33.37 27.67 63.53
SCNpilot_cont_750_p_scaffold_705 55 47361 bp 33.73 31.47 63.79
SCNpilot_cont_750_p_scaffold_835 55 41621 bp 34.10 28.72 48.69
SCNpilot_cont_750_p_scaffold_883 54 40087 bp 35.30 30.37 58.81
SCNpilot_cont_750_p_scaffold_824 54 42121 bp 33.61 28.43 54.39
SCNpilot_cont_750_p_scaffold_708 53 47237 bp 31.94 28.78 44.17
SCNpilot_cont_750_p_scaffold_884 52 53105 bp 34.12 29.05 72.38
Displaying items 1-50 of 12209 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.