ggKbase home page
Advanced Search
Search Help

SCNPILOT_CONT_750_P_Rhizobiales_62_31

In projects: SCNPILOT_CONT_750_P

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_750_p_UNK

Properties

Avg. coverage: 30.64 Longest contig: 140.13 Kbp Bin length: 3.48 Mbp GC content: 62.43 %
Contigs count: 273 Features count: 3467 rRNAs count: 0 tRNAs count: 26

Genome completeness

partial RP 7 / 55 BSCG 6 / 51 MC: 2 ASCG 5 / 38

Description

from TS-ESOM, is split, unclear if it should be merged with another bin

Displaying items 1-50 of 273 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_750_p_scaffold_184
Order: Rhizobiales (76.03%)
121 140126 bp 60.23 31.66 89.44
SCNpilot_cont_750_p_scaffold_642
Order: Rhizobiales (83.1%)
71 64248 bp 59.94 31.45 90.36
SCNpilot_cont_750_p_scaffold_1943
Order: Rhizobiales (82.86%)
70 67595 bp 63.45 35.48 90.59
SCNpilot_cont_750_p_scaffold_787
Order: Rhizobiales (58.21%)
67 43661 bp 58.59 41.94 94.41
SCNpilot_cont_750_p_scaffold_407
Class: Alphaproteobacteria (56.14%)
57 73180 bp 59.64 31.55 88.72
SCNpilot_cont_750_p_scaffold_878
Order: Rhizobiales (62%)
50 53930 bp 59.74 31.18 89.51
SCNpilot_cont_750_p_scaffold_507
Order: Rhizobiales (69.39%)
49 61568 bp 59.58 30.29 90.32
SCNpilot_cont_750_p_scaffold_698
Order: Rhizobiales (72.73%)
44 47851 bp 59.56 31.46 88.42
SCNpilot_cont_750_p_scaffold_939
Order: Rhizobiales (59.52%)
42 37736 bp 57.01 28.96 82.20
SCNpilot_cont_750_p_scaffold_736
Genus: Bradyrhizobium (59.52%)
42 54716 bp 57.18 29.80 92.57
SCNpilot_cont_750_p_scaffold_2932
Order: Rhizobiales (85.37%)
41 40997 bp 61.16 32.47 86.58
SCNpilot_cont_750_p_scaffold_1575
Order: Rhizobiales (94.29%)
35 38291 bp 62.91 30.56 85.98
SCNpilot_cont_750_p_scaffold_3960
Order: Rhizobiales (93.94%)
33 29343 bp 66.02 30.74 91.08
SCNpilot_cont_750_p_scaffold_964
Order: Rhizobiales (71.88%)
32 36796 bp 61.95 31.28 92.02
SCNpilot_cont_750_p_scaffold_1117
Order: Rhizobiales (84.38%)
32 42742 bp 63.39 32.83 91.48
SCNpilot_cont_750_p_scaffold_981
Order: Rhizobiales (58.06%)
31 35943 bp 60.45 30.90 91.96
SCNpilot_cont_750_p_scaffold_1520
Order: Rhizobiales (63.33%)
30 24751 bp 60.79 32.50 89.11
SCNpilot_cont_750_p_scaffold_2184
Order: Rhizobiales (93.1%)
29 29125 bp 61.87 28.75 89.62
SCNpilot_cont_750_p_scaffold_1123
Class: Alphaproteobacteria (65.52%)
29 33561 bp 58.90 30.17 84.18
SCNpilot_cont_750_p_scaffold_1389
Order: Rhizobiales (79.31%)
29 31547 bp 62.57 31.87 92.46
SCNpilot_cont_750_p_scaffold_1996
Genus: Bradyrhizobium (50%)
28 29115 bp 63.25 30.52 91.48
SCNpilot_cont_750_p_scaffold_1419
Order: Rhizobiales (51.85%)
27 26319 bp 59.34 29.60 90.66
SCNpilot_cont_750_p_scaffold_1483
Phylum: Proteobacteria (62.96%)
27 25179 bp 59.39 31.55 86.56
SCNpilot_cont_750_p_scaffold_3683
Order: Rhizobiales (96.3%)
27 23798 bp 63.53 30.22 88.33
SCNpilot_cont_750_p_scaffold_2132 25 18466 bp 60.08 28.51 83.18
SCNpilot_cont_750_p_scaffold_3801
Order: Rhizobiales (96%)
25 27122 bp 63.72 30.94 89.23
SCNpilot_cont_750_p_scaffold_1311
Class: Alphaproteobacteria (56%)
25 28185 bp 62.59 31.54 90.15
SCNpilot_cont_750_p_scaffold_2147
Order: Rhizobiales (82.61%)
23 18316 bp 59.53 28.12 83.75
SCNpilot_cont_750_p_scaffold_2275 23 17497 bp 58.75 32.71 83.70
SCNpilot_cont_750_p_scaffold_2639
Domain: Bacteria (81.82%)
22 21115 bp 63.09 31.71 93.02
SCNpilot_cont_750_p_scaffold_1497
Order: Rhizobiales (90.91%)
22 25085 bp 62.99 32.35 92.23
SCNpilot_cont_750_p_scaffold_7138
Order: Rhizobiales (90.91%)
22 16738 bp 63.24 30.02 78.13
SCNpilot_cont_750_p_scaffold_2237
Order: Rhizobiales (95.45%)
22 21358 bp 62.94 30.98 89.62
SCNpilot_cont_750_p_scaffold_4866
Order: Rhizobiales (63.64%)
22 20386 bp 57.59 37.57 86.21
SCNpilot_cont_750_p_scaffold_3196
Order: Rhizobiales (90.91%)
22 20861 bp 62.88 29.12 91.69
SCNpilot_cont_750_p_scaffold_2341
Class: Alphaproteobacteria (50%)
20 17125 bp 61.86 32.76 89.18
SCNpilot_cont_750_p_scaffold_2814
Order: Rhizobiales (95%)
20 22671 bp 63.50 31.74 87.71
SCNpilot_cont_750_p_scaffold_1696
Order: Rhizobiales (100%)
19 29069 bp 61.19 32.46 93.36
SCNpilot_cont_750_p_scaffold_2893
Genus: Nitrobacter (52.63%)
19 19176 bp 59.63 31.72 86.00
SCNpilot_cont_750_p_scaffold_2154
Order: Rhizobiales (100%)
19 23230 bp 62.97 31.05 80.00
SCNpilot_cont_750_p_scaffold_7062
Order: Rhizobiales (94.44%)
18 17980 bp 64.39 28.03 81.49
SCNpilot_cont_750_p_scaffold_4083
Genus: Nitrobacter (66.67%)
18 16883 bp 63.53 30.82 88.10
SCNpilot_cont_750_p_scaffold_4365
Order: Rhizobiales (83.33%)
18 17601 bp 63.74 29.67 90.73
SCNpilot_cont_750_p_scaffold_2065
Order: Rhizobiales (100%)
18 18938 bp 59.41 36.84 92.15
SCNpilot_cont_750_p_scaffold_4537
Order: Rhizobiales (88.24%)
17 13630 bp 64.40 27.93 89.82
SCNpilot_cont_750_p_scaffold_2041
Order: Rhizobiales (82.35%)
17 19168 bp 63.38 29.58 93.25
SCNpilot_cont_750_p_scaffold_1901
Species: Rhodopseudomonas palustris (52.94%)
17 20466 bp 62.56 33.57 90.81
SCNpilot_cont_750_p_scaffold_1757
Genus: Bradyrhizobium (50%)
16 21794 bp 61.83 26.57 91.87
SCNpilot_cont_750_p_scaffold_5175
Order: Rhizobiales (87.5%)
16 9120 bp 62.43 29.85 71.88
SCNpilot_cont_750_p_scaffold_2190
Genus: Bradyrhizobium (50%)
16 18003 bp 64.22 32.95 88.20
Displaying items 1-50 of 273 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.