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SCNpilot_expt_1000_bf_scaffold_25551_1

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

near complete RP 52 / 55 BSCG 51 / 51 MC: 2 ASCG 12 / 38
Location: 332..850

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5L3_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 82.3
  • Coverage: 175.0
  • Bit_score: 280
  • Evalue 8.40e-73
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 80.3
  • Coverage: 173.0
  • Bit_score: 280
  • Evalue 2.60e-73
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EIL94754.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.3
  • Coverage: 175.0
  • Bit_score: 280
  • Evalue 1.20e-72

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 519
ATGACCACCCGGGAACACCAGCAACGCTTCGAGTCGCTGCTGCGCGAGCATCGCCGCATCGTGTTCAAGGTGGCCGGGCTGTACAGCCGCAGCGCGGCCGATCGCGAGGACCTGGTGCAGGAGATCAGCGCCCAGCTTTGGCGATCGTTCGATCGCTACGACGAGACACGGGCGAAGTTCTCGACCTGGCTGTACCGGATCGCGCTGAACGTGGCGATCGCGCAGGCGCGGCGCTGGCCCGCGATGGACCGGCATGAACCGCTGAGCAGCCACCACCTGGACTCCATCGGCAGCGAACCGGTGGCCGAACCCGACGAGCGCCTGGAGGCGCTGCACGCCTTCATCGGCCAACTCGATGCGCTCAACCGCGCGCTGATCCTGCTGTACCTGGAAGACCGCAGCTACGCCGAGATGGCCGAGATCCTCGGCATCAGCGAAACCAACGTGGCGACCAAGATCAGCCGCATCAAGCAGAAGTTGCGCGGACGGATGACCGCCGCGGAAACCACCGGAGCATGA
PROTEIN sequence
Length: 173
MTTREHQQRFESLLREHRRIVFKVAGLYSRSAADREDLVQEISAQLWRSFDRYDETRAKFSTWLYRIALNVAIAQARRWPAMDRHEPLSSHHLDSIGSEPVAEPDERLEALHAFIGQLDALNRALILLYLEDRSYAEMAEILGISETNVATKISRIKQKLRGRMTAAETTGA*