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SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

SCNPILOT_EXPT_1000_BF_Rhodanobacter_67_85
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Rhodanobacter  →  Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Description

not good coverage range, and not clear on one side of TS-ESOM, probably a substrain

Displaying items 1-50 of 282 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_30586
Species: Rhodanobacter thiooxydans (66.67%)
3 2674 bp 66.31 64.98 102.32
SCNpilot_expt_1000_bf_scaffold_34017
Species: Rhodanobacter denitrificans (66.67%)
3 1613 bp 75.20 105.86 101.55
SCNpilot_expt_1000_bf_scaffold_9513
Order: Xanthomonadales (85.71%)
7 4860 bp 69.28 87.96 100.43
SCNpilot_expt_1000_bf_scaffold_35256
Species: Rhodanobacter thiooxydans (100%)
2 1303 bp 72.52 98.43 100.15
SCNpilot_expt_1000_bf_scaffold_35654
Species: Rhodanobacter thiooxydans (50%)
2 1292 bp 69.89 74.69 100.08
SCNpilot_expt_1000_bf_scaffold_23700
Order: Xanthomonadales (50%)
4 1814 bp 70.45 73.04 100.06
SCNpilot_expt_1000_bf_scaffold_31711
Species: Rhodanobacter spathiphylli (50%)
2 1422 bp 70.11 96.69 100.00
SCNpilot_expt_1000_bf_scaffold_16733
Species: Rhodanobacter denitrificans (50%)
2 2436 bp 72.70 87.34 100.00
SCNpilot_expt_1000_bf_scaffold_33741
Species: Rhodanobacter denitrificans (100%)
2 1350 bp 70.81 84.07 100.00
SCNpilot_expt_1000_bf_scaffold_23547
Species: Rhodanobacter thiooxydans (100%)
1 1826 bp 70.54 90.09 99.89
SCNpilot_expt_1000_bf_scaffold_25137
Species: Rhodanobacter spathiphylli (100%)
1 1727 bp 62.94 66.44 99.88
SCNpilot_expt_1000_bf_scaffold_48585
Species: Rhodanobacter denitrificans (100%)
1 1655 bp 69.85 85.80 99.88
SCNpilot_expt_1000_bf_scaffold_37382
Species: Rhodanobacter denitrificans (100%)
1 1241 bp 71.80 70.91 99.84
SCNpilot_expt_1000_bf_scaffold_38396
Species: Rhodanobacter spathiphylli (100%)
1 1215 bp 66.83 71.60 99.75
SCNpilot_expt_1000_bf_scaffold_23200
Species: Rhodanobacter thiooxydans (50%)
2 1850 bp 71.62 93.11 99.08
SCNpilot_expt_1000_bf_scaffold_13059
Species: Rhodanobacter denitrificans (66.67%)
3 2991 bp 67.57 86.59 98.80
SCNpilot_expt_1000_bf_scaffold_35225
Species: R_Gemmatimonadetes_71_11 (100%)
1 1304 bp 63.57 65.18 98.47
SCNpilot_expt_1000_bf_scaffold_6364
Species: Rhodanobacter fulvus (66.67%)
3 5174 bp 69.17 78.86 98.28
SCNpilot_expt_1000_bf_scaffold_25554
Species: Rhodanobacter denitrificans (100%)
3 1705 bp 70.97 83.14 98.18
SCNpilot_expt_1000_bf_scaffold_22281
Species: Mizugakiibacter sediminis (50%)
2 1917 bp 69.69 96.64 97.81
SCNpilot_expt_1000_bf_scaffold_4057
Species: Rhodanobacter sp. 115 (66.67%)
6 7103 bp 67.84 77.33 97.78
SCNpilot_expt_1000_bf_scaffold_14814
Phylum: Proteobacteria (80%)
5 3185 bp 66.47 73.08 97.58
SCNpilot_expt_1000_bf_scaffold_26535
Species: Rhodanobacter thiooxydans (66.67%)
3 1653 bp 67.03 80.76 97.10
SCNpilot_expt_1000_bf_scaffold_6886
Species: Rhodanobacter spathiphylli (60%)
5 4888 bp 68.25 92.27 96.85
SCNpilot_expt_1000_bf_scaffold_4669
Genus: Rhodanobacter (80%)
5 6457 bp 70.40 92.57 96.78
SCNpilot_expt_1000_bf_scaffold_9751
Genus: Rhodanobacter (83.33%)
6 4080 bp 68.50 75.37 96.62
SCNpilot_expt_1000_bf_scaffold_2042
Genus: Rhodanobacter (80%)
10 11655 bp 71.17 102.81 96.53
SCNpilot_expt_1000_bf_scaffold_7416
Genus: Rhodanobacter (60%)
5 8042 bp 70.79 93.17 96.21
SCNpilot_expt_1000_bf_scaffold_25893
Species: Oleiagrimonas soli (100%)
1 1686 bp 67.32 94.60 96.09
SCNpilot_expt_1000_bf_scaffold_849
Order: Xanthomonadales (90.63%)
32 49852 bp 69.31 96.44 95.91
SCNpilot_expt_1000_bf_scaffold_23691
Genus: Rhodanobacter (80%)
5 1815 bp 68.60 84.02 95.87
SCNpilot_expt_1000_bf_scaffold_41791
Species: Rhodanobacter denitrificans (50%)
2 1117 bp 71.44 82.36 95.61
SCNpilot_expt_1000_bf_scaffold_8956
Class: Gammaproteobacteria (50%)
6 4365 bp 58.65 70.62 95.60
SCNpilot_expt_1000_bf_scaffold_3033
Species: Rhodanobacter spathiphylli (100%)
5 8712 bp 68.90 86.86 95.56
SCNpilot_expt_1000_bf_scaffold_12449
Species: Rhodanobacter fulvus (50%)
4 3340 bp 70.54 83.46 95.48
SCNpilot_expt_1000_bf_scaffold_3543
Genus: Rhodanobacter (77.78%)
9 7833 bp 68.94 85.54 95.14
SCNpilot_expt_1000_bf_scaffold_4889
Order: Xanthomonadales (100%)
7 6954 bp 70.18 86.57 95.13
SCNpilot_expt_1000_bf_scaffold_22045
Species: Rhodanobacter thiooxydans (100%)
1 1931 bp 69.65 102.67 95.08
SCNpilot_expt_1000_bf_scaffold_2395
Genus: Rhodanobacter (66.67%)
9 10338 bp 69.06 100.24 94.89
SCNpilot_expt_1000_bf_scaffold_8143
Species: Rhodanobacter spathiphylli (71.43%)
7 8136 bp 71.25 91.11 94.84
SCNpilot_expt_1000_bf_scaffold_19602
Species: Rhodanobacter denitrificans (50%)
6 4023 bp 70.05 74.14 94.78
SCNpilot_expt_1000_bf_scaffold_29330
Species: Dyella jiangningensis (50%)
4 2629 bp 68.73 89.96 94.71
SCNpilot_expt_1000_bf_scaffold_6992
Genus: Rhodanobacter (71.43%)
7 6729 bp 66.37 80.70 94.69
SCNpilot_expt_1000_bf_scaffold_1789
Species: Rhodanobacter denitrificans (50%)
10 14910 bp 69.70 96.56 94.69
SCNpilot_expt_1000_bf_scaffold_1321
Genus: Rhodanobacter (66.67%)
18 16646 bp 69.30 96.42 94.60
SCNpilot_expt_1000_bf_scaffold_8103
Species: Rhodanobacter thiooxydans (66.67%)
3 5408 bp 66.68 77.06 94.53
SCNpilot_expt_1000_bf_scaffold_21408
Species: Rhodanobacter denitrificans (100%)
2 1981 bp 71.28 78.12 94.50
SCNpilot_expt_1000_bf_scaffold_9895
Species: Rhodanobacter denitrificans (50%)
2 3721 bp 67.16 86.87 94.41
SCNpilot_expt_1000_bf_scaffold_39091
Species: Rhodanobacter denitrificans (100%)
2 1824 bp 71.93 114.99 94.41
SCNpilot_expt_1000_bf_scaffold_2919
Species: Rhodanobacter denitrificans (72.73%)
11 12513 bp 68.58 96.26 94.13
Displaying items 1-50 of 282 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.