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SCNpilot_expt_1000_bf_scaffold_37968_2

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_59_19

partial RP 30 / 55 MC: 3 BSCG 29 / 51 MC: 2 ASCG 5 / 38
Location: comp(108..704)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.0
  • Coverage: 198.0
  • Bit_score: 396
  • Evalue 2.90e-107
2'-5' RNA ligase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LN03_RHITR similarity UNIREF
DB: UNIREF100
  • Identity: 98.0
  • Coverage: 198.0
  • Bit_score: 396
  • Evalue 2.10e-107
  • rbh
2'-5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 98.0
  • Coverage: 198.0
  • Bit_score: 396
  • Evalue 6.50e-108
  • rbh

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Taxonomy

Rhizobium tropici → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 597
ATGCCGAGACTTTTTACCGCCCTCGAAATTCCGCGCAATGCGGCCATGAGCCTGTCATTGTTGCGCGGTGGTCTCCCGGGAGCCAGGTGGATCGACGTTGAAAATTATCACATCACCTTGCGCTTCATCGGCGATGTCGATGGCCGCACGGCCGATGAGATCGTCGACCGGCTGGACCGGATAGATCGACCTGAATTCCAGCTCCGGCTGGAGGGCATCGGTTCCTTCGGCTCCAAAAAGCCGCACTCGGTCTGGGCCGGGGTCTCGCAAACGCCTGACATGTTCGCCCTGCAAGGCGAGATCGAGCGGATCTGCCAACGCATCGGTCTTCAGCCGGACCCCCGCAAGTTCACGCCGCATGTGACGCTCGCCAGGCTGAAATCCTCGCGGGTCGATGATGTCGTGCATTATCTCTCCGGCCGCGGCAATTTCTATACTGCGCCGTTCACTGTCGGGCGCTTCGTGCTTCTGTCCTCGCGCGAATCGGTCGGCGGCGGTCCCTACCTCACCGAAGAGATCTTCCCGCTTCACGAGCCCCGCAGCACGTTCCCGTCCTTGGGCAACAGTTCGCTGCAGCCGGCTAAGAGCATGGTATAG
PROTEIN sequence
Length: 199
MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDGRTADEIVDRLDRIDRPEFQLRLEGIGSFGSKKPHSVWAGVSQTPDMFALQGEIERICQRIGLQPDPRKFTPHVTLARLKSSRVDDVVHYLSGRGNFYTAPFTVGRFVLLSSRESVGGGPYLTEEIFPLHEPRSTFPSLGNSSLQPAKSMV*