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SCNpilot_expt_1000_bf_scaffold_40809_3

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_59_19

partial RP 30 / 55 MC: 3 BSCG 29 / 51 MC: 2 ASCG 5 / 38
Location: 1532..1906

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UTP3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 98.0
  • Coverage: 102.0
  • Bit_score: 207
  • Evalue 8.50e-51
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.0
  • Coverage: 102.0
  • Bit_score: 207
  • Evalue 1.20e-50
rpoH2; alternative sigma factor RpoH2 similarity KEGG
DB: KEGG
  • Identity: 96.1
  • Coverage: 102.0
  • Bit_score: 203
  • Evalue 5.10e-50

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Taxonomy

Rhizobium freirei → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 375
ATGCTTGCTGCCCTTTTCGTCGACCGCGGCATAGAGACGATTTNNNNNNNNNNNNNNNNNNNNNNNCATATGACGAATATGGCTGCAGATCGGCGCATGATCAAAGTTGCGATGGCTGCTCCCTATCTCGATCGCGACGAAGAGCATAATCTCGCCATTCGCTGGAAGGACCACGATGATCGTGGTGCCCGCAATCAGATCGCAACCGCCCATATGCGCCTCGTCATTTCCATGGCGGGGAAGTTTCGCAATTTCGGACTGCCTATGAGCGATCTGGTGCAGGAAGGCTATGTCGGCCTGCTGGAAGCGGCTGCCCGCTTCGAGCCGGAGCGCGAGGTTCGCTTCTCGACCTATGCAAGCTGGTGGATACGCGCT
PROTEIN sequence
Length: 125
MLAALFVDRGIETIXXXXXXXXHMTNMAADRRMIKVAMAAPYLDRDEEHNLAIRWKDHDDRGARNQIATAHMRLVISMAGKFRNFGLPMSDLVQEGYVGLLEAAARFEPEREVRFSTYASWWIRA