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SCNPILOT_CONT_300_BF_Rhizobiales_62_8

SCNPILOT_EXPT_1000_BF_Alphaproteobacteria_61_6
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 251-300 of 400 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_9780
Species: alpha proteobacterium MA2 (50%)
4 3754 bp 62.09 5.99 87.51
SCNpilot_expt_1000_bf_scaffold_11994
Class: Alphaproteobacteria (100%)
4 5147 bp 64.43 6.22 90.93
SCNpilot_expt_1000_bf_scaffold_27488
Class: Alphaproteobacteria (50%)
4 1604 bp 59.79 4.68 95.39
SCNpilot_expt_1000_bf_scaffold_19318
Class: Alphaproteobacteria (75%)
4 2716 bp 60.75 6.44 81.85
SCNpilot_expt_1000_bf_scaffold_18601
Species: Collimonas arenae (50%)
4 3431 bp 62.31 6.78 90.24
SCNpilot_expt_1000_bf_scaffold_23123
Order: Rhizobiales (50%)
4 2231 bp 61.68 6.50 89.15
SCNpilot_expt_1000_bf_scaffold_10998
Class: Alphaproteobacteria (100%)
4 3417 bp 63.89 6.95 94.91
SCNpilot_expt_1000_bf_scaffold_15194
Domain: Bacteria (50%)
4 2641 bp 62.93 6.34 72.59
SCNpilot_expt_1000_bf_scaffold_23644
Class: Alphaproteobacteria (50%)
4 2698 bp 64.42 6.12 91.51
SCNpilot_expt_1000_bf_scaffold_7510
Species: Parvibaculum lavamentivorans (50%)
4 4586 bp 64.15 7.30 95.38
SCNpilot_expt_1000_bf_scaffold_12356
Species: Parvibaculum lavamentivorans (50%)
4 3123 bp 62.76 7.28 96.83
SCNpilot_expt_1000_bf_scaffold_12873
Order: Rhizobiales (50%)
4 5623 bp 62.28 5.65 88.30
SCNpilot_expt_1000_bf_scaffold_22178
Order: Rhizobiales (66.67%)
3 2270 bp 63.04 7.82 86.30
SCNpilot_expt_1000_bf_scaffold_21339
Phylum: Proteobacteria (66.67%)
3 1987 bp 59.29 5.66 92.40
SCNpilot_expt_1000_bf_scaffold_28908
Order: Rhodospirillales (66.67%)
3 1538 bp 63.46 5.20 100.46
SCNpilot_expt_1000_bf_scaffold_25579
Class: Alphaproteobacteria (100%)
3 1703 bp 63.18 7.34 99.88
SCNpilot_expt_1000_bf_scaffold_15999
Order: Rhizobiales (66.67%)
3 2922 bp 63.28 6.42 76.28
SCNpilot_expt_1000_bf_scaffold_36650
Order: Rhodospirillales (66.67%)
3 2194 bp 61.26 5.01 88.61
SCNpilot_expt_1000_bf_scaffold_22963
Order: Enterobacteriales (66.67%)
3 1868 bp 63.92 6.96 98.77
SCNpilot_expt_1000_bf_scaffold_11303
Class: Alphaproteobacteria (100%)
3 4266 bp 62.21 4.75 94.16
SCNpilot_expt_1000_bf_scaffold_16065 3 2516 bp 63.99 6.66 95.15
SCNpilot_expt_1000_bf_scaffold_43490
Class: Alphaproteobacteria (66.67%)
3 1064 bp 62.41 3.29 98.12
SCNpilot_expt_1000_bf_scaffold_10796
Order: Rhizobiales (66.67%)
3 4054 bp 62.01 6.91 75.41
SCNpilot_expt_1000_bf_scaffold_36922
Class: Alphaproteobacteria (66.67%)
3 2180 bp 62.06 4.36 72.11
SCNpilot_expt_1000_bf_scaffold_19648
Class: Alphaproteobacteria (66.67%)
3 2662 bp 61.12 5.45 73.70
SCNpilot_expt_1000_bf_scaffold_25099
Phylum: Proteobacteria (100%)
3 1730 bp 60.92 6.36 95.90
SCNpilot_expt_1000_bf_scaffold_25620
Species: R_Gammaproteobacteria_56_15 (66.67%)
3 1701 bp 54.79 3.23 95.94
SCNpilot_expt_1000_bf_scaffold_44718
Class: Alphaproteobacteria (66.67%)
3 1028 bp 63.72 5.35 83.17
SCNpilot_expt_1000_bf_scaffold_15792
Domain: Bacteria (100%)
3 3041 bp 60.90 6.82 63.63
SCNpilot_expt_1000_bf_scaffold_19930
Class: Alphaproteobacteria (66.67%)
3 2103 bp 63.24 8.20 94.29
SCNpilot_expt_1000_bf_scaffold_16620
Order: Rhizobiales (66.67%)
3 2448 bp 60.01 5.72 71.57
SCNpilot_expt_1000_bf_scaffold_14984
Genus: Novosphingobium (66.67%)
3 4272 bp 61.12 5.97 97.54
SCNpilot_expt_1000_bf_scaffold_23999
Genus: Nitrobacter (66.67%)
3 1794 bp 65.77 4.18 92.47
SCNpilot_expt_1000_bf_scaffold_17979 3 2295 bp 62.92 6.43 80.52
SCNpilot_expt_1000_bf_scaffold_19436
Domain: Bacteria (66.67%)
3 2149 bp 63.05 5.12 90.46
SCNpilot_expt_1000_bf_scaffold_38503
Class: Alphaproteobacteria (66.67%)
3 1212 bp 61.80 8.66 75.00
SCNpilot_expt_1000_bf_scaffold_9673 3 3782 bp 62.96 6.41 88.76
SCNpilot_expt_1000_bf_scaffold_32572
Class: Alphaproteobacteria (66.67%)
3 1832 bp 60.32 6.41 88.43
SCNpilot_expt_1000_bf_scaffold_41630
Class: Alphaproteobacteria (100%)
3 2193 bp 60.83 6.04 81.53
SCNpilot_expt_1000_bf_scaffold_26799
Domain: Bacteria (100%)
3 1639 bp 63.03 6.56 90.97
SCNpilot_expt_1000_bf_scaffold_42846
Species: Candidatus Phaeomarinobacter ectocarpi (66.67%)
3 1592 bp 62.94 6.44 98.37
SCNpilot_expt_1000_bf_scaffold_25415
Phylum: Parcubacteria (66.67%)
3 1713 bp 60.83 5.84 95.45
SCNpilot_expt_1000_bf_scaffold_28511
Phylum: Proteobacteria (100%)
3 2196 bp 55.05 6.03 78.69
SCNpilot_expt_1000_bf_scaffold_30122
Phylum: Proteobacteria (66.67%)
3 1486 bp 60.70 6.56 99.13
SCNpilot_expt_1000_bf_scaffold_17511
Class: Alphaproteobacteria (66.67%)
3 3076 bp 56.63 5.36 87.68
SCNpilot_expt_1000_bf_scaffold_19225
Species: R_Phenylobacterium_69_31 (66.67%)
3 2665 bp 62.81 5.82 97.60
SCNpilot_expt_1000_bf_scaffold_13066
Class: Alphaproteobacteria (66.67%)
3 3503 bp 57.35 5.99 87.70
SCNpilot_expt_1000_bf_scaffold_43088 3 1077 bp 60.26 5.11 83.01
SCNpilot_expt_1000_bf_scaffold_21985
Class: Alphaproteobacteria (100%)
3 2278 bp 64.53 7.35 101.54
SCNpilot_expt_1000_bf_scaffold_15611
Order: Rhizobiales (66.67%)
3 2579 bp 62.31 4.85 84.34
Displaying items 251-300 of 400 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.