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SCNPILOT_EXPT_750_P_Chlamydiae_37_5_partial

SCNPILOT_EXPT_1000_BF_Chlamydiales_38_4
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Chlamydiales  →  Chlamydiia  →  Chlamydiae  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_1000_bf_UNK

Properties

Avg. coverage: 3.85 Longest contig: 15.99 Kbp Bin length: 1.92 Mbp GC content: 37.50 %
Contigs count: 578 Features count: 2162 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 37 / 55 MC: 1 BSCG 35 / 51 MC: 6 ASCG 7 / 38 MC: 1
Displaying items 401-450 of 578 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_32013
Species: Neochlamydia sp. EPS4 (50%)
2 1410 bp 35.25 3.72 96.38
SCNpilot_expt_1000_bf_scaffold_32781
Species: Thermosediminibacter oceani (50%)
2 1383 bp 39.48 4.16 83.73
SCNpilot_expt_1000_bf_scaffold_28698
Species: Parachlamydia acanthamoebae (50%)
2 1547 bp 39.43 2.59 76.60
SCNpilot_expt_1000_bf_scaffold_23460
Species: Chlamydia sp. 'Rubis' (50%)
2 1832 bp 38.37 3.28 99.40
SCNpilot_expt_1000_bf_scaffold_32021
Species: Neochlamydia hartmannellae (50%)
2 1410 bp 41.56 2.84 99.36
SCNpilot_expt_1000_bf_scaffold_72246
Species: Neochlamydia sp. TUME1 (50%)
2 1053 bp 39.03 3.80 101.43
SCNpilot_expt_1000_bf_scaffold_27838
Species: R_Chlamydiae_45_22 (50%)
2 1589 bp 38.83 3.46 79.30
SCNpilot_expt_1000_bf_scaffold_23977
Species: Neochlamydia sp. EPS4 (100%)
2 1796 bp 37.25 2.51 80.85
SCNpilot_expt_1000_bf_scaffold_27843
Species: Neochlamydia sp. TUME1 (50%)
2 1588 bp 39.80 3.78 99.18
SCNpilot_expt_1000_bf_scaffold_32028
Species: Neochlamydia sp. TUME1 (50%)
2 1409 bp 39.46 2.48 83.46
SCNpilot_expt_1000_bf_scaffold_34133
Species: Neochlamydia sp. TUME1 (50%)
2 1338 bp 39.69 3.74 83.86
SCNpilot_expt_1000_bf_scaffold_32550
Species: candidate division TM7 genomosp. GTL1 (50%)
2 1391 bp 33.86 3.24 97.05
SCNpilot_expt_1000_bf_scaffold_16622
Species: Legionella norrlandica (50%)
2 2448 bp 38.36 3.27 82.11
SCNpilot_expt_1000_bf_scaffold_31159
Species: Neochlamydia sp. TUME1 (100%)
2 1444 bp 38.02 2.77 84.14
SCNpilot_expt_1000_bf_scaffold_13266
Species: Neochlamydia sp. EPS4 (50%)
2 2946 bp 36.66 5.43 82.18
SCNpilot_expt_1000_bf_scaffold_18966
Species: Neochlamydia sp. TUME1 (50%)
2 2192 bp 37.45 2.85 94.57
SCNpilot_expt_1000_bf_scaffold_37918
Species: Neochlamydia sp. TUME1 (50%)
2 1941 bp 37.87 3.86 85.47
SCNpilot_expt_1000_bf_scaffold_26270
Species: Neochlamydia sp. EPS4 (50%)
2 1666 bp 35.77 3.75 87.52
SCNpilot_expt_1000_bf_scaffold_22767
Species: Neochlamydia sp. TUME1 (50%)
2 1881 bp 39.77 3.46 90.59
SCNpilot_expt_1000_bf_scaffold_24007
Species: Simkania negevensis (50%)
2 1794 bp 37.24 2.51 64.38
SCNpilot_expt_1000_bf_scaffold_16120
Species: Clostridium sp. CAG:715 (50%)
2 2967 bp 36.00 3.37 67.34
SCNpilot_expt_1000_bf_scaffold_32049
Species: Neochlamydia sp. EPS4 (100%)
2 1409 bp 40.88 2.66 99.65
SCNpilot_expt_1000_bf_scaffold_17210
Species: Neochlamydia sp. EPS4 (50%)
2 3166 bp 40.30 4.90 94.76
SCNpilot_expt_1000_bf_scaffold_31683
Species: Neochlamydia sp. EPS4 (50%)
2 1423 bp 36.33 4.04 86.02
SCNpilot_expt_1000_bf_scaffold_21421
Species: BJP_IG2102_Syntrophobacterales_60_12 (50%)
2 1980 bp 37.93 2.90 78.03
SCNpilot_expt_1000_bf_scaffold_19693
Species: Neochlamydia sp. EPS4 (50%)
2 2722 bp 36.88 2.94 58.41
SCNpilot_expt_1000_bf_scaffold_7862
Species: Neochlamydia sp. TUME1 (100%)
2 4434 bp 35.27 4.40 100.27
SCNpilot_expt_1000_bf_scaffold_22265
Species: Neochlamydia sp. TUME1 (100%)
2 5565 bp 33.46 3.77 34.66
SCNpilot_expt_1000_bf_scaffold_20003
Species: Neochlamydia sp. TUME1 (50%)
2 2097 bp 39.68 3.81 91.99
SCNpilot_expt_1000_bf_scaffold_31179
Species: Neochlamydia sp. TUME1 (50%)
2 1443 bp 41.58 4.16 99.58
SCNpilot_expt_1000_bf_scaffold_19189
Species: Chlamydia sp. 'Rubis' (100%)
2 2172 bp 39.27 4.14 79.28
SCNpilot_expt_1000_bf_scaffold_38000
Species: Neochlamydia sp. EPS4 (50%)
2 1225 bp 42.04 3.47 97.96
SCNpilot_expt_1000_bf_scaffold_22017
Species: Criblamydia sequanensis (50%)
2 1934 bp 39.56 4.01 55.07
SCNpilot_expt_1000_bf_scaffold_20525 2 2053 bp 37.41 4.63 91.33
SCNpilot_expt_1000_bf_scaffold_42594
Species: Neochlamydia sp. EPS4 (50%)
2 1092 bp 33.61 3.89 68.68
SCNpilot_expt_1000_bf_scaffold_20020
Species: marine sediment metagenome (50%)
2 2096 bp 33.68 3.34 75.29
SCNpilot_expt_1000_bf_scaffold_27893
Species: GWB1_Bdellovibrionales_55_8_curated (50%)
2 1586 bp 39.91 4.26 87.58
SCNpilot_expt_1000_bf_scaffold_31456
Species: Neochlamydia sp. TUME1 (50%)
2 1432 bp 37.85 3.49 73.74
SCNpilot_expt_1000_bf_scaffold_45216
Species: R_Chlamydiae_49_12 (100%)
2 1494 bp 36.14 4.02 43.78
SCNpilot_expt_1000_bf_scaffold_36234
Species: Neochlamydia sp. EPS4 (50%)
2 1275 bp 39.61 2.94 96.94
SCNpilot_expt_1000_bf_scaffold_32595
Species: R_Chlamydiae_49_9 (50%)
2 1389 bp 35.49 3.42 78.40
SCNpilot_expt_1000_bf_scaffold_30115
Species: Chlamydia sp. 'Rubis' (50%)
2 1486 bp 38.02 3.20 91.86
SCNpilot_expt_1000_bf_scaffold_33365
Species: Neochlamydia sp. EPS4 (50%)
2 1363 bp 41.09 2.38 98.83
SCNpilot_expt_1000_bf_scaffold_13056
Species: Neochlamydia sp. EPS4 (50%)
2 3507 bp 35.87 4.42 91.96
SCNpilot_expt_1000_bf_scaffold_33884
Species: Neochlamydia sp. EPS4 (100%)
2 1842 bp 41.42 3.26 85.67
SCNpilot_expt_1000_bf_scaffold_23022
Species: Neochlamydia hartmannellae (50%)
2 1863 bp 39.13 3.89 77.46
SCNpilot_expt_1000_bf_scaffold_34446
Species: Oscillochloris trichoides (50%)
2 1328 bp 35.99 2.82 80.42
SCNpilot_expt_1000_bf_scaffold_25698
Species: Neochlamydia sp. EPS4 (50%)
2 1697 bp 40.25 5.45 90.16
SCNpilot_expt_1000_bf_scaffold_44274
Species: Neochlamydia sp. TUME1 (50%)
2 1042 bp 37.62 3.84 78.31
SCNpilot_expt_1000_bf_scaffold_43339
Species: Chlamydia sp. 'Rubis' (50%)
2 1068 bp 38.48 2.81 81.46
Displaying items 401-450 of 578 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.