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SCNPILOT_CONT_300_BF_Sphingomonadales_67_36

SCNPILOT_EXPT_1000_BF_Sphingomonas_66_4
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Sphingomonas  →  Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_1000_bf_UNK

Properties

Avg. coverage: 3.79 Longest contig: 5.66 Kbp Bin length: 531.19 Kbp GC content: 66.33 %
Contigs count: 310 Features count: 788 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 BSCG 8 / 51 ASCG 4 / 38
Displaying items 201-250 of 310 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_34439
Species: Burkholderia gladioli (50%)
2 1810 bp 71.60 4.42 99.61
SCNpilot_expt_1000_bf_scaffold_28002
Species: Sphingobium sp. ba1 (50%)
2 1581 bp 66.54 4.74 83.49
SCNpilot_expt_1000_bf_scaffold_30638
Species: Novosphingobium subterraneum (50%)
2 1464 bp 67.69 3.76 99.80
SCNpilot_expt_1000_bf_scaffold_36760
Species: Sphingomonas taxi (50%)
2 1260 bp 66.75 3.37 95.71
SCNpilot_expt_1000_bf_scaffold_43852
Species: Sphingomonas sp. RIT328 (50%)
2 1054 bp 64.42 3.56 45.54
SCNpilot_expt_1000_bf_scaffold_28275
Species: Sphingopyxis fribergensis (100%)
2 2321 bp 68.07 3.23 99.01
SCNpilot_expt_1000_bf_scaffold_35253
Species: Sphingomonas taxi (50%)
2 1303 bp 68.30 6.33 98.54
SCNpilot_expt_1000_bf_scaffold_44803
Species: Burkholderia lata (50%)
2 1025 bp 67.51 4.39 100.10
SCNpilot_expt_1000_bf_scaffold_42380
Species: Sphingomonas taxi (100%)
2 1099 bp 69.79 4.32 93.63
SCNpilot_expt_1000_bf_scaffold_41685
Species: Novosphingobium sp. Rr 2-17 (50%)
2 1119 bp 71.94 5.59 100.80
SCNpilot_expt_1000_bf_scaffold_56096
Species: Sphingomonas taxi (50%)
2 1144 bp 67.13 3.72 64.51
SCNpilot_expt_1000_bf_scaffold_47488
Species: alpha proteobacterium U9-1i (50%)
2 1251 bp 69.06 3.00 99.76
SCNpilot_expt_1000_bf_scaffold_60370
Species: Sphingopyxis alaskensis (50%)
2 1415 bp 62.90 4.06 71.24
SCNpilot_expt_1000_bf_scaffold_56112
Species: Sphingomonas taxi (50%)
2 1442 bp 63.25 5.55 63.25
SCNpilot_expt_1000_bf_scaffold_44046
Species: Burkholderiaceae bacterium 16 (50%)
2 1048 bp 67.75 3.10 98.19
SCNpilot_expt_1000_bf_scaffold_38064
Species: Sphingomonas paucimobilis (50%)
2 1587 bp 71.20 3.78 73.91
SCNpilot_expt_1000_bf_scaffold_26096
Species: Sphingomonas taxi (50%)
2 1675 bp 67.64 4.18 99.04
SCNpilot_expt_1000_bf_scaffold_22850
Species: Novosphingobium lindaniclasticum (50%)
2 1876 bp 63.86 3.46 89.07
SCNpilot_expt_1000_bf_scaffold_33154
Species: Methylocystis sp. SC2 (50%)
2 1370 bp 60.29 2.55 80.58
SCNpilot_expt_1000_bf_scaffold_30162
Species: Sphingomonas sp. Ant20 (50%)
2 1484 bp 67.32 3.54 99.06
SCNpilot_expt_1000_bf_scaffold_20332
Species: Sphingopyxis fribergensis (50%)
2 2069 bp 68.58 4.11 98.89
SCNpilot_expt_1000_bf_scaffold_44564
Species: Novosphingobium sp. MD-1 (50%)
2 1033 bp 72.99 3.63 100.19
SCNpilot_expt_1000_bf_scaffold_27181
Species: Sphingomonas taxi (50%)
2 1619 bp 64.98 3.40 99.69
SCNpilot_expt_1000_bf_scaffold_27183 2 1619 bp 60.35 3.86 47.99
SCNpilot_expt_1000_bf_scaffold_36543
Species: Sphingomonas taxi (50%)
2 1267 bp 67.09 3.55 89.74
SCNpilot_expt_1000_bf_scaffold_37498
Species: Sphingobium yanoikuyae (100%)
2 1238 bp 70.68 3.63 97.17
SCNpilot_expt_1000_bf_scaffold_49347
Species: R_Sphingopyxis_65_24 (50%)
2 2291 bp 61.89 4.15 62.59
SCNpilot_expt_1000_bf_scaffold_26628
Species: Sphingomonas parapaucimobilis (50%)
2 1648 bp 70.69 3.94 98.48
SCNpilot_expt_1000_bf_scaffold_23599
Species: Sphingomonas paucimobilis (100%)
2 1821 bp 67.87 3.29 99.34
SCNpilot_expt_1000_bf_scaffold_36056
Species: Sphingomonas paucimobilis (50%)
2 1651 bp 65.54 2.88 81.95
SCNpilot_expt_1000_bf_scaffold_46033
Species: Sphingobium chlorophenolicum (50%)
2 1513 bp 67.28 3.80 85.06
SCNpilot_expt_1000_bf_scaffold_43916
Species: Sphingomonas paucimobilis (50%)
2 1584 bp 67.30 4.89 89.58
SCNpilot_expt_1000_bf_scaffold_42940
Species: Sphingomonas taxi (50%)
2 1081 bp 71.05 4.16 100.74
SCNpilot_expt_1000_bf_scaffold_36320
Species: Flavobacterium hydatis (50%)
2 1273 bp 64.02 3.73 100.16
SCNpilot_expt_1000_bf_scaffold_32683
Species: Sphingomonas sp. RIT328 (50%)
2 1386 bp 71.43 3.25 86.15
SCNpilot_expt_1000_bf_scaffold_31035
Species: Sphingomonas sp. Ant20 (50%)
2 1448 bp 67.89 2.76 90.12
SCNpilot_expt_1000_bf_scaffold_29661
Species: Sphingobium baderi (50%)
2 1505 bp 67.71 3.99 86.71
SCNpilot_expt_1000_bf_scaffold_41230
Species: Sphingopyxis sp. LC363 (50%)
2 1133 bp 65.40 4.19 79.70
SCNpilot_expt_1000_bf_scaffold_32944
Species: Sphingomonas taxi (50%)
2 1377 bp 70.01 3.81 100.00
SCNpilot_expt_1000_bf_scaffold_42697
Species: Sphingobium baderi (50%)
2 1089 bp 68.78 2.98 83.75
SCNpilot_expt_1000_bf_scaffold_30721
Species: Ralstonia sp. A12 (50%)
2 1845 bp 61.46 3.12 96.42
SCNpilot_expt_1000_bf_scaffold_60607
Species: Sphingomonas paucimobilis (50%)
2 1297 bp 61.53 3.86 66.15
SCNpilot_expt_1000_bf_scaffold_45571
Species: Sphingobium chlorophenolicum (50%)
2 1002 bp 67.07 2.99 100.00
SCNpilot_expt_1000_bf_scaffold_23622
Species: Sphingomonas changbaiensis (50%)
2 1820 bp 69.78 3.57 72.86
SCNpilot_expt_1000_bf_scaffold_37803
Species: Sphingomonas sp. RIT328 (100%)
2 1230 bp 69.02 3.25 99.76
SCNpilot_expt_1000_bf_scaffold_51286
Species: Sphingomonas sp. LH128 (50%)
2 1692 bp 64.95 5.61 56.74
SCNpilot_expt_1000_bf_scaffold_27495
Species: Hirschia baltica (50%)
2 1604 bp 58.73 3.12 76.50
SCNpilot_expt_1000_bf_scaffold_30223
Species: Sphingobium baderi (100%)
2 1481 bp 68.47 3.38 100.27
SCNpilot_expt_1000_bf_scaffold_42976
Species: Sphingomonas taxi (100%)
2 1080 bp 69.26 3.47 95.56
SCNpilot_expt_1000_bf_scaffold_43697
Species: Novosphingobium sp. MD-1 (50%)
2 1058 bp 68.81 4.25 94.99
Displaying items 201-250 of 310 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.