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SCNPILOT_CONT_300_BF_Sphingomonadales_67_36

SCNPILOT_EXPT_1000_BF_Sphingomonas_66_4
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Sphingomonas  →  Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 251-300 of 310 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_20387
Order: Sphingomonadales (50%)
4 3859 bp 66.57 3.63 77.20
SCNpilot_expt_1000_bf_scaffold_27495
Species: Hirschia baltica (50%)
2 1604 bp 58.73 3.12 76.50
SCNpilot_expt_1000_bf_scaffold_16744
Order: Sphingomonadales (50%)
4 3589 bp 67.62 3.83 76.40
SCNpilot_expt_1000_bf_scaffold_35740
Genus: Sphingomonas (50%)
4 1806 bp 66.67 4.43 75.75
SCNpilot_expt_1000_bf_scaffold_28468
Species: Roseomonas cervicalis (50%)
2 2249 bp 70.48 4.00 75.50
SCNpilot_expt_1000_bf_scaffold_42739
Species: Sphingopyxis sp. LC81 (50%)
2 1087 bp 72.95 3.22 75.35
SCNpilot_expt_1000_bf_scaffold_60404
Domain: Bacteria (66.67%)
3 1086 bp 66.67 3.68 74.86
SCNpilot_expt_1000_bf_scaffold_36392
Species: Sphingomonas changbaiensis (50%)
2 1271 bp 66.88 3.93 74.59
SCNpilot_expt_1000_bf_scaffold_45406
Species: Sphingomonas paucimobilis (50%)
2 1380 bp 70.07 4.53 74.57
SCNpilot_expt_1000_bf_scaffold_39006
Order: Burkholderiales (50%)
4 2079 bp 64.45 3.85 74.46
SCNpilot_expt_1000_bf_scaffold_26913
Genus: Sphingomonas (66.67%)
3 1633 bp 62.40 2.91 74.04
SCNpilot_expt_1000_bf_scaffold_29381
Species: Sphingomonas wittichii (66.67%)
3 2285 bp 66.39 3.61 73.92
SCNpilot_expt_1000_bf_scaffold_38064
Species: Sphingomonas paucimobilis (50%)
2 1587 bp 71.20 3.78 73.91
SCNpilot_expt_1000_bf_scaffold_71248
Species: Nitrospirillum amazonense (50%)
2 1130 bp 65.04 4.87 73.81
SCNpilot_expt_1000_bf_scaffold_43892
Class: Alphaproteobacteria (66.67%)
3 1676 bp 64.14 5.22 73.39
SCNpilot_expt_1000_bf_scaffold_37565
Species: Sphingopyxis fribergensis (50%)
2 1237 bp 58.61 2.83 73.24
SCNpilot_expt_1000_bf_scaffold_48650
Genus: Sphingomonas (66.67%)
3 2413 bp 69.50 3.94 73.10
SCNpilot_expt_1000_bf_scaffold_23622
Species: Sphingomonas changbaiensis (50%)
2 1820 bp 69.78 3.57 72.86
SCNpilot_expt_1000_bf_scaffold_32633 3 1388 bp 61.02 3.60 72.62
SCNpilot_expt_1000_bf_scaffold_27814
Species: Sphingomonas taxi (100%)
2 1590 bp 65.35 3.46 72.45
SCNpilot_expt_1000_bf_scaffold_42340
Species: Rhizobium sp. CF142 (50%)
2 1100 bp 68.91 3.18 71.45
SCNpilot_expt_1000_bf_scaffold_60370
Species: Sphingopyxis alaskensis (50%)
2 1415 bp 62.90 4.06 71.24
SCNpilot_expt_1000_bf_scaffold_31077
Species: Novosphingobium aromaticivorans (50%)
2 1446 bp 66.18 2.42 70.75
SCNpilot_expt_1000_bf_scaffold_17790
Species: Sphingobium lactosutens (50%)
4 2318 bp 61.09 3.67 70.15
SCNpilot_expt_1000_bf_scaffold_21256 3 2499 bp 54.42 4.00 69.03
SCNpilot_expt_1000_bf_scaffold_43366
Order: Sphingomonadales (100%)
3 1800 bp 65.56 4.17 67.67
SCNpilot_expt_1000_bf_scaffold_42009
Species: R_Phenylobacterium_69_31 (50%)
2 2309 bp 60.94 3.25 67.56
SCNpilot_expt_1000_bf_scaffold_28133
Species: Agrobacterium tumefaciens (50%)
2 1574 bp 60.17 2.70 67.47
SCNpilot_expt_1000_bf_scaffold_60607
Species: Sphingomonas paucimobilis (50%)
2 1297 bp 61.53 3.86 66.15
SCNpilot_expt_1000_bf_scaffold_49680 3 1412 bp 63.39 3.01 66.08
SCNpilot_expt_1000_bf_scaffold_22455
Species: BJP_08E140C01_10KDA_Sphingopyxis_64_55 (50%)
2 2514 bp 58.63 3.08 65.75
SCNpilot_expt_1000_bf_scaffold_29093
Order: Sphingomonadales (66.67%)
3 2002 bp 61.54 3.75 65.63
SCNpilot_expt_1000_bf_scaffold_31561
Genus: Sphingomonas (50%)
4 2186 bp 59.24 3.20 65.46
SCNpilot_expt_1000_bf_scaffold_56096
Species: Sphingomonas taxi (50%)
2 1144 bp 67.13 3.72 64.51
SCNpilot_expt_1000_bf_scaffold_56112
Species: Sphingomonas taxi (50%)
2 1442 bp 63.25 5.55 63.25
SCNpilot_expt_1000_bf_scaffold_49347
Species: R_Sphingopyxis_65_24 (50%)
2 2291 bp 61.89 4.15 62.59
SCNpilot_expt_1000_bf_scaffold_25590 3 2243 bp 65.36 3.34 61.12
SCNpilot_expt_1000_bf_scaffold_40503
Species: Sphingomonas sp. SRS2 (50%)
2 1838 bp 64.91 2.72 60.72
SCNpilot_expt_1000_bf_scaffold_44892
Species: Sphingomonas sp. WHSC-8 (50%)
2 1022 bp 68.69 4.89 60.18
SCNpilot_expt_1000_bf_scaffold_52959
Species: Sphingomonas paucimobilis (50%)
2 1476 bp 62.94 3.90 59.96
SCNpilot_expt_1000_bf_scaffold_26069
Genus: Sphingomonas (66.67%)
3 2383 bp 64.96 3.46 59.29
SCNpilot_expt_1000_bf_scaffold_32137
Genus: Sphingomonas (50%)
4 2471 bp 61.55 2.63 59.13
SCNpilot_expt_1000_bf_scaffold_61104 3 1315 bp 57.64 3.80 58.17
SCNpilot_expt_1000_bf_scaffold_29901
Order: Sphingomonadales (60%)
5 2871 bp 63.88 3.31 56.95
SCNpilot_expt_1000_bf_scaffold_71216
Species: Sphingomonas sanxanigenens (50%)
2 1134 bp 63.49 4.63 56.88
SCNpilot_expt_1000_bf_scaffold_51286
Species: Sphingomonas sp. LH128 (50%)
2 1692 bp 64.95 5.61 56.74
SCNpilot_expt_1000_bf_scaffold_37385
Genus: Sphingomonas (50%)
4 2242 bp 64.23 3.79 56.07
SCNpilot_expt_1000_bf_scaffold_27335
Order: Sphingomonadales (60%)
5 3962 bp 60.07 4.10 54.37
SCNpilot_expt_1000_bf_scaffold_45168
Species: Sphingomonas parapaucimobilis (50%)
2 1712 bp 65.60 3.36 53.97
SCNpilot_expt_1000_bf_scaffold_51047
Order: Sphingomonadales (100%)
3 2059 bp 65.57 3.40 51.00
Displaying items 251-300 of 310 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.