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SCNPILOT_EXPT_750_P_Flavobacteriia_40_20

SCNPILOT_EXPT_1000_BF_Flavobacterium_38_4
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Flavobacterium  →  Flavobacteriales  →  Flavobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_1000_bf_UNK

Properties

Avg. coverage: 3.72 Longest contig: 4.97 Kbp Bin length: 665.50 Kbp GC content: 38.25 %
Contigs count: 415 Features count: 970 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 15 / 55 MC: 1 BSCG 14 / 51 ASCG 4 / 38
Displaying items 201-250 of 415 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_16621
Species: Flavobacterium cauense (50%)
2 2448 bp 39.62 3.06 72.30
SCNpilot_expt_1000_bf_scaffold_41864
Species: Flavobacterium sp. CF136 (50%)
2 1115 bp 40.81 3.14 92.83
SCNpilot_expt_1000_bf_scaffold_42817
Species: Flavobacterium suncheonense (50%)
2 1085 bp 33.18 2.76 98.71
SCNpilot_expt_1000_bf_scaffold_31674
Species: Flavobacterium sp. AED (50%)
2 1424 bp 42.06 2.98 86.17
SCNpilot_expt_1000_bf_scaffold_35698
Species: Flavobacterium suncheonense (50%)
2 1291 bp 38.65 3.10 59.72
SCNpilot_expt_1000_bf_scaffold_44730
Species: Flavobacterium limnosediminis (50%)
2 1321 bp 43.38 3.41 69.04
SCNpilot_expt_1000_bf_scaffold_36964
Species: Flavobacterium sp. MEB061 (50%)
2 1254 bp 36.44 3.59 66.27
SCNpilot_expt_1000_bf_scaffold_42823
Species: Flavobacterium saliperosum (100%)
2 1085 bp 43.69 3.46 96.22
SCNpilot_expt_1000_bf_scaffold_22000
Species: Pedobacter sp. BAL39 (50%)
2 1935 bp 42.22 3.10 97.52
SCNpilot_expt_1000_bf_scaffold_51644
Species: Flavobacterium enshiense (50%)
2 1350 bp 40.30 3.15 92.67
SCNpilot_expt_1000_bf_scaffold_31425
Species: Flavobacterium limnosediminis (50%)
2 1434 bp 38.84 2.09 86.19
SCNpilot_expt_1000_bf_scaffold_37409
Species: Flavobacterium enshiense (50%)
2 1241 bp 39.97 3.42 94.04
SCNpilot_expt_1000_bf_scaffold_36202
Species: Flavobacterium psychrophilum (50%)
2 1276 bp 41.54 3.13 94.51
SCNpilot_expt_1000_bf_scaffold_29283
Species: Flavobacterium saliperosum (50%)
2 1522 bp 38.17 2.63 91.06
SCNpilot_expt_1000_bf_scaffold_32563
Species: Algibacter lectus (50%)
2 1390 bp 30.65 3.24 94.96
SCNpilot_expt_1000_bf_scaffold_30083
Species: Flavobacterium limnosediminis (50%)
2 1488 bp 37.57 2.02 89.11
SCNpilot_expt_1000_bf_scaffold_32565
Species: Flavobacterium subsaxonicum (100%)
2 1390 bp 42.59 2.52 97.77
SCNpilot_expt_1000_bf_scaffold_35199
Species: Flavobacterium suncheonense (50%)
2 1305 bp 38.85 2.87 91.72
SCNpilot_expt_1000_bf_scaffold_51669
Species: Flavobacterium hibernum (50%)
2 1173 bp 41.01 3.62 93.35
SCNpilot_expt_1000_bf_scaffold_34152
Species: Flavobacterium sp. EM1321 (50%)
2 1338 bp 38.42 2.99 76.68
SCNpilot_expt_1000_bf_scaffold_28480
Species: Flavobacterium saliperosum (50%)
2 1558 bp 41.78 2.89 88.19
SCNpilot_expt_1000_bf_scaffold_36464
Species: Chryseobacterium soli (50%)
2 1269 bp 39.09 3.74 86.76
SCNpilot_expt_1000_bf_scaffold_29545
Species: Flavobacterium cauense (50%)
2 1510 bp 37.48 2.32 94.77
SCNpilot_expt_1000_bf_scaffold_37929
Species: Flavobacterium cauense (50%)
2 1227 bp 41.08 2.85 81.91
SCNpilot_expt_1000_bf_scaffold_31947
Species: Flavobacterium indicum (50%)
2 1413 bp 40.27 3.72 97.88
SCNpilot_expt_1000_bf_scaffold_43300
Species: Flavobacterium indicum (50%)
2 1070 bp 29.44 3.27 71.78
SCNpilot_expt_1000_bf_scaffold_28998
Species: Flavobacterium enshiense (50%)
2 1534 bp 37.87 2.77 89.37
SCNpilot_expt_1000_bf_scaffold_36216
Species: Flavobacterium saliperosum (50%)
2 1276 bp 37.07 2.74 85.34
SCNpilot_expt_1000_bf_scaffold_42073
Species: Flavobacterium cauense (50%)
2 1108 bp 39.08 2.26 98.29
SCNpilot_expt_1000_bf_scaffold_20779
Species: Flavobacterium saliperosum (50%)
2 2032 bp 41.68 3.94 96.41
SCNpilot_expt_1000_bf_scaffold_27116
Species: Chryseobacterium taiwanense (50%)
2 1623 bp 43.93 2.62 85.40
SCNpilot_expt_1000_bf_scaffold_29813
Species: Flavobacterium saliperosum (50%)
2 1499 bp 36.89 2.84 99.67
SCNpilot_expt_1000_bf_scaffold_32581
Species: Zobellia galactanivorans (50%)
2 1390 bp 36.33 2.16 99.50
SCNpilot_expt_1000_bf_scaffold_29815
Species: Flavobacterium beibuense (50%)
2 2057 bp 43.02 3.16 81.82
SCNpilot_expt_1000_bf_scaffold_41642
Species: Flavobacterium subsaxonicum (50%)
2 1121 bp 33.01 4.46 59.14
SCNpilot_expt_1000_bf_scaffold_29819
Species: Flavobacterium hibernum (50%)
2 1498 bp 37.52 3.34 98.33
SCNpilot_expt_1000_bf_scaffold_39155
Species: Flavobacterium limnosediminis (50%)
2 1192 bp 34.48 3.78 70.47
SCNpilot_expt_1000_bf_scaffold_34685 2 1320 bp 42.35 3.03 89.55
SCNpilot_expt_1000_bf_scaffold_37437
Species: Flavobacterium suncheonense (100%)
2 1240 bp 36.85 2.82 95.08
SCNpilot_expt_1000_bf_scaffold_34179
Species: Algoriphagus machipongonensis (50%)
2 1337 bp 37.77 3.37 59.24
SCNpilot_expt_1000_bf_scaffold_41141
Species: Pedobacter antarcticus (50%)
2 1136 bp 36.53 2.20 87.15
SCNpilot_expt_1000_bf_scaffold_40285
Species: Flavobacterium saliperosum (50%)
2 1160 bp 34.91 3.45 93.62
SCNpilot_expt_1000_bf_scaffold_27135
Species: Sphingobacterium spiritivorum (100%)
2 1622 bp 36.13 2.77 65.66
SCNpilot_expt_1000_bf_scaffold_40033
Species: Myroides profundi (50%)
2 1167 bp 37.96 3.21 88.43
SCNpilot_expt_1000_bf_scaffold_29578
Species: Flavobacterium branchiophilum (50%)
2 1509 bp 36.18 2.49 94.04
SCNpilot_expt_1000_bf_scaffold_41402
Species: Kordia algicida (100%)
2 1128 bp 38.74 3.10 100.53
SCNpilot_expt_1000_bf_scaffold_35235
Species: Flavobacterium beibuense (50%)
2 1304 bp 39.57 2.30 84.89
SCNpilot_expt_1000_bf_scaffold_40292
Species: Flavobacterium cauense (50%)
2 1508 bp 39.12 2.65 59.88
SCNpilot_expt_1000_bf_scaffold_44271
Species: Flavobacterium sp. 316 (50%)
2 1666 bp 41.36 2.40 72.75
SCNpilot_expt_1000_bf_scaffold_26831
Species: Flavobacterium beibuense (50%)
2 1637 bp 43.19 4.12 100.43
Displaying items 201-250 of 415 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.