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SCNPILOT_EXPT_750_P_Flavobacteriia_40_20

SCNPILOT_EXPT_1000_BF_Flavobacterium_38_4
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Flavobacterium  →  Flavobacteriales  →  Flavobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_1000_bf_UNK

Properties

Avg. coverage: 3.72 Longest contig: 4.97 Kbp Bin length: 665.50 Kbp GC content: 38.25 %
Contigs count: 415 Features count: 970 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 15 / 55 MC: 1 BSCG 14 / 51 ASCG 4 / 38
Displaying items 151-200 of 415 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_33771
Species: Flavobacterium enshiense (50%)
2 1349 bp 42.18 3.15 99.41
SCNpilot_expt_1000_bf_scaffold_27283
Species: Solitalea canadensis (50%)
2 1614 bp 35.19 2.63 77.88
SCNpilot_expt_1000_bf_scaffold_44156
Species: Pseudomonas aeruginosa (50%)
2 1045 bp 49.38 2.87 99.62
SCNpilot_expt_1000_bf_scaffold_42757
Species: Flavobacterium psychrophilum (50%)
2 1087 bp 36.43 2.30 77.00
SCNpilot_expt_1000_bf_scaffold_26461
Species: Jejuia pallidilutea (50%)
2 2599 bp 38.13 2.89 102.85
SCNpilot_expt_1000_bf_scaffold_43734
Species: Flavobacterium limnosediminis (50%)
2 1057 bp 37.56 3.07 89.40
SCNpilot_expt_1000_bf_scaffold_31871
Species: Flavobacterium saliperosum (50%)
2 1416 bp 42.23 2.82 95.34
SCNpilot_expt_1000_bf_scaffold_41295
Species: Flavobacterium enshiense (50%)
2 1131 bp 38.55 3.09 92.31
SCNpilot_expt_1000_bf_scaffold_27545
Species: Flavobacterium johnsoniae (50%)
2 1602 bp 38.76 77.87 41.57
SCNpilot_expt_1000_bf_scaffold_40697
Species: GWF1_Flavobacteria_32_7_curated (50%)
2 1149 bp 38.21 3.05 91.64
SCNpilot_expt_1000_bf_scaffold_23941
Species: Flavobacterium rivuli (50%)
2 2330 bp 30.64 3.65 69.27
SCNpilot_expt_1000_bf_scaffold_38181
Species: Chryseobacterium taiwanense (50%)
2 1220 bp 30.33 3.48 71.56
SCNpilot_expt_1000_bf_scaffold_41045
Species: Flavobacterium cauense (50%)
2 1139 bp 37.49 3.29 106.15
SCNpilot_expt_1000_bf_scaffold_27038
Species: Flavobacterium suncheonense (50%)
2 1627 bp 37.25 3.23 85.56
SCNpilot_expt_1000_bf_scaffold_42256
Species: Flavobacterium cauense (50%)
2 1102 bp 37.93 3.63 86.30
SCNpilot_expt_1000_bf_scaffold_39587
Species: Flavobacterium enshiense (50%)
2 1179 bp 37.57 2.33 83.71
SCNpilot_expt_1000_bf_scaffold_44171
Species: Flavobacterium cauense (100%)
2 1719 bp 39.50 2.91 46.77
SCNpilot_expt_1000_bf_scaffold_26988
Species: Flavobacterium beibuense (50%)
2 1629 bp 41.38 3.07 90.79
SCNpilot_expt_1000_bf_scaffold_42262
Species: Flavobacterium cauense (50%)
2 1102 bp 38.38 3.63 85.75
SCNpilot_expt_1000_bf_scaffold_21879
Species: Flavobacterium aquatile (100%)
2 1943 bp 35.31 2.96 95.57
SCNpilot_expt_1000_bf_scaffold_31122
Species: Flavobacterium cauense (50%)
2 1445 bp 39.65 3.29 90.10
SCNpilot_expt_1000_bf_scaffold_39082
Species: Flavobacterium cauense (50%)
2 1194 bp 41.04 1.68 90.70
SCNpilot_expt_1000_bf_scaffold_28683
Species: Flavobacterium cauense (50%)
2 1548 bp 38.18 2.26 92.05
SCNpilot_expt_1000_bf_scaffold_42267
Species: Chryseobacterium soli (50%)
2 1102 bp 37.48 2.95 72.96
SCNpilot_expt_1000_bf_scaffold_21628
Species: Flavobacterium limnosediminis (50%)
2 1962 bp 39.09 2.55 86.85
SCNpilot_expt_1000_bf_scaffold_44181
Species: Solitalea canadensis (50%)
2 1045 bp 33.49 3.11 85.26
SCNpilot_expt_1000_bf_scaffold_19135
Species: Flavobacterium suncheonense (50%)
2 2176 bp 40.35 3.10 88.92
SCNpilot_expt_1000_bf_scaffold_35409
Species: Flavobacterium limnosediminis (50%)
2 1299 bp 44.11 3.08 93.53
SCNpilot_expt_1000_bf_scaffold_36674
Species: Flavobacterium saliperosum (50%)
2 1262 bp 39.70 3.17 91.05
SCNpilot_expt_1000_bf_scaffold_38973
Species: Flavobacterium suncheonense (100%)
2 1197 bp 36.68 2.92 78.45
SCNpilot_expt_1000_bf_scaffold_39605
Species: Flavobacterium rivuli (50%)
2 1179 bp 40.80 2.76 92.88
SCNpilot_expt_1000_bf_scaffold_35930
Species: Flavobacterium saliperosum (50%)
2 1284 bp 36.68 3.31 88.79
SCNpilot_expt_1000_bf_scaffold_41586
Species: Flavobacterium frigoris (100%)
2 1495 bp 45.28 2.34 103.34
SCNpilot_expt_1000_bf_scaffold_49638
Species: Flavobacteria bacterium BAL38 (50%)
2 1309 bp 39.42 2.29 94.65
SCNpilot_expt_1000_bf_scaffold_31651
Species: Flavobacterium beibuense (50%)
2 1425 bp 38.46 2.81 68.42
SCNpilot_expt_1000_bf_scaffold_36427
Species: Joostella marina (50%)
2 1270 bp 36.77 2.56 77.01
SCNpilot_expt_1000_bf_scaffold_31652
Species: Flavobacterium cauense (50%)
2 1425 bp 38.46 3.16 93.05
SCNpilot_expt_1000_bf_scaffold_43260
Species: Flavobacterium sp. EM1308 (50%)
2 1071 bp 38.75 3.27 67.51
SCNpilot_expt_1000_bf_scaffold_39356
Species: Flavobacterium cauense (50%)
2 1186 bp 40.13 2.74 91.82
SCNpilot_expt_1000_bf_scaffold_38470
Species: Flavobacterium limnosediminis (50%)
2 1213 bp 36.44 2.47 101.65
SCNpilot_expt_1000_bf_scaffold_33047
Species: Flavobacterium enshiense (50%)
2 1374 bp 36.75 2.55 99.56
SCNpilot_expt_1000_bf_scaffold_37895
Species: Chryseobacterium luteum (50%)
2 1228 bp 41.86 3.26 74.27
SCNpilot_expt_1000_bf_scaffold_35425
Species: GWF1_Flavobacteria_32_7_curated (50%)
2 1299 bp 37.57 3.08 88.22
SCNpilot_expt_1000_bf_scaffold_41594
Species: Flavobacterium limnosediminis (50%)
2 1122 bp 38.41 2.67 97.59
SCNpilot_expt_1000_bf_scaffold_39618
Species: Flavobacterium limnosediminis (50%)
2 1178 bp 42.36 2.55 99.58
SCNpilot_expt_1000_bf_scaffold_27587
Species: Flavobacterium columnare (50%)
2 1600 bp 37.88 2.81 77.63
SCNpilot_expt_1000_bf_scaffold_40228
Species: Flavobacterium saliperosum (50%)
2 1162 bp 42.77 2.80 88.81
SCNpilot_expt_1000_bf_scaffold_29773
Species: Flavobacterium sp. F52 (100%)
2 1500 bp 44.00 2.67 89.20
SCNpilot_expt_1000_bf_scaffold_32798
Species: Niastella koreensis (50%)
2 1382 bp 42.40 2.71 71.64
SCNpilot_expt_1000_bf_scaffold_41090
Species: Flavobacterium rivuli (50%)
2 1137 bp 42.66 2.64 99.74
Displaying items 151-200 of 415 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.