ggKbase | organisms

Consensus taxonomy: Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_expt_1000_bf_UNK

Properties

Avg. coverage: 3.59 Longest contig: 5.05 Kbp Bin length: 636.16 Kbp GC content: 61.59 %

Contigs count: 364 Features count: 946 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 10 / 55 BSCG 9 / 51 ASCG 2 / 38

Displaying items 201-250 of 364 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_45412 Species: Altererythrobacter atlanticus (50%)	2	1638 bp	53.17	2.75	71.61
SCNpilot_expt_1000_bf_scaffold_30821 Species: Erythrobacter sp. SD-21 (50%)	2	1456 bp	63.19	3.43	99.11
SCNpilot_expt_1000_bf_scaffold_28959 Species: Altererythrobacter atlanticus (50%)	2	1536 bp	61.52	3.58	100.00
SCNpilot_expt_1000_bf_scaffold_41080 Species: Sphingobium lactosutens (50%)	2	1137 bp	58.75	3.08	59.10
SCNpilot_expt_1000_bf_scaffold_33819 Species: Novosphingobium tardaugens (50%)	2	2074 bp	56.89	4.34	77.39
SCNpilot_expt_1000_bf_scaffold_44459 Species: Novosphingobium malaysiense (50%)	2	1036 bp	60.33	2.90	94.40
SCNpilot_expt_1000_bf_scaffold_41085 Species: R_Erythrobacter_63_10 (50%)	2	1137 bp	61.30	2.64	89.97
SCNpilot_expt_1000_bf_scaffold_44720 Species: BJP_IG2102_Porphyrobacter_62_18 (50%)	2	1028 bp	61.67	2.92	100.10
SCNpilot_expt_1000_bf_scaffold_32547 Species: Novosphingobium malaysiense (50%)	2	1714 bp	62.78	3.50	91.54
SCNpilot_expt_1000_bf_scaffold_30580 Species: Erythrobacter sp. JL475 (50%)	2	1467 bp	64.08	5.45	97.75
SCNpilot_expt_1000_bf_scaffold_30838 Species: Novosphingobium sp. MD-1 (50%)	2	1456 bp	60.71	3.61	93.54
SCNpilot_expt_1000_bf_scaffold_33319 Species: Altererythrobacter atlanticus (50%)	2	1365 bp	59.34	4.40	88.57
SCNpilot_expt_1000_bf_scaffold_27093 Species: Novosphingobium sp. MD-1 (100%)	2	1624 bp	66.69	4.46	100.12
SCNpilot_expt_1000_bf_scaffold_66976 Species: R_Erythrobacter_63_10 (50%)	2	1066 bp	58.54	3.99	100.19
SCNpilot_expt_1000_bf_scaffold_33074 Species: Sphingobium sp. SYK-6 (100%)	2	1819 bp	61.13	2.75	98.96
SCNpilot_expt_1000_bf_scaffold_30082 Species: Altererythrobacter atlanticus (100%)	2	1488 bp	59.81	3.36	89.11
SCNpilot_expt_1000_bf_scaffold_32820 Species: Methylocella silvestris (50%)	2	1381 bp	62.78	3.08	90.59
SCNpilot_expt_1000_bf_scaffold_27356 Species: Erythrobacter litoralis (50%)	2	1611 bp	64.06	3.41	98.14
SCNpilot_expt_1000_bf_scaffold_27612 Species: Sphingobium sp. SYK-6 (50%)	2	1599 bp	61.10	3.75	96.25
SCNpilot_expt_1000_bf_scaffold_36460 Species: Altererythrobacter atlanticus (100%)	2	1269 bp	67.69	4.53	94.09
SCNpilot_expt_1000_bf_scaffold_71187 Species: Sphingobium sp. SYK-6 (50%)	2	1147 bp	58.24	3.71	86.84
SCNpilot_expt_1000_bf_scaffold_18722 Species: Novosphingobium sp. Rr 2-17 (50%)	2	2217 bp	58.91	3.83	99.32
SCNpilot_expt_1000_bf_scaffold_39141 Species: Altererythrobacter atlanticus (50%)	2	1192 bp	61.83	4.40	100.67
SCNpilot_expt_1000_bf_scaffold_44497 Species: Novosphingobium sp. MD-1 (50%)	2	1035 bp	63.86	2.90	90.14
SCNpilot_expt_1000_bf_scaffold_35466 Species: R_Erythrobacter_63_10 (50%)	2	1297 bp	63.69	2.89	98.07
SCNpilot_expt_1000_bf_scaffold_36474 Species: Altererythrobacter atlanticus (50%)	2	1269 bp	65.41	5.12	96.69
SCNpilot_expt_1000_bf_scaffold_13803 Species: Altererythrobacter atlanticus (50%)	2	2850 bp	62.81	3.68	91.16
SCNpilot_expt_1000_bf_scaffold_42331 Species: Altererythrobacter atlanticus (50%)	2	1100 bp	61.64	4.09	99.00
SCNpilot_expt_1000_bf_scaffold_38006 Species: Sphingobium sp. SYK-6 (50%)	2	1777 bp	63.98	3.24	102.81
SCNpilot_expt_1000_bf_scaffold_42080 Species: Novosphingobium tardaugens (50%)	2	1108 bp	59.48	4.29	98.29
SCNpilot_expt_1000_bf_scaffold_22283 Species: Altererythrobacter atlanticus (50%)	2	1917 bp	64.84	4.04	83.88
SCNpilot_expt_1000_bf_scaffold_38268 Species: Altererythrobacter atlanticus (100%)	2	1218 bp	66.42	4.11	100.00
SCNpilot_expt_1000_bf_scaffold_34941 Species: Kirrobacter mercurialis (50%)	2	1312 bp	61.20	3.62	58.31
SCNpilot_expt_1000_bf_scaffold_42597 Species: Altererythrobacter atlanticus (50%)	2	1092 bp	65.48	3.43	97.53
SCNpilot_expt_1000_bf_scaffold_31455 Species: Sphingomonas sp. WHSC-8 (50%)	2	1433 bp	65.18	2.79	100.91
SCNpilot_expt_1000_bf_scaffold_44255 Species: uncultured organism (50%)	2	1042 bp	62.00	4.32	93.57
SCNpilot_expt_1000_bf_scaffold_20024 Species: Novosphingobium tardaugens (100%)	2	2095 bp	61.15	3.34	99.24
SCNpilot_expt_1000_bf_scaffold_14513 Species: Erythrobacter sp. SD-21 (50%)	2	2740 bp	63.39	4.38	94.71
SCNpilot_expt_1000_bf_scaffold_35737 Species: Novosphingobium subterraneum (50%)	2	1290 bp	62.40	2.91	100.00
SCNpilot_expt_1000_bf_scaffold_37954 Species: Sphingobium sp. SYK-6 (100%)	2	1226 bp	59.95	2.45	87.36
SCNpilot_expt_1000_bf_scaffold_36237 Species: Sphingobium sp. SYK-6 (50%)	2	1275 bp	61.57	2.75	96.47
SCNpilot_expt_1000_bf_scaffold_63148 Species: Novosphingobium sp. MD-1 (50%)	2	1033 bp	59.44	3.87	85.38
SCNpilot_expt_1000_bf_scaffold_35742 Species: Novosphingobium tardaugens (50%)	2	1290 bp	66.98	4.65	69.07
SCNpilot_expt_1000_bf_scaffold_33370 Species: Sphingobium yanoikuyae (50%)	2	1363 bp	60.09	3.48	89.36
SCNpilot_expt_1000_bf_scaffold_31466 Species: Rhodococcus sp. MEB064 (50%)	2	1432 bp	63.83	4.19	100.35
SCNpilot_expt_1000_bf_scaffold_35491 Species: Altererythrobacter atlanticus (100%)	2	1297 bp	62.30	2.70	98.54
SCNpilot_expt_1000_bf_scaffold_37195 Species: Novosphingobium sp. PP1Y (50%)	2	1248 bp	63.38	4.01	100.24
SCNpilot_expt_1000_bf_scaffold_28262 Species: Delftia acidovorans (50%)	2	1569 bp	59.15	3.51	53.92
SCNpilot_expt_1000_bf_scaffold_31215 Species: Erythrobacter longus (50%)	2	1442 bp	62.00	3.47	73.02
SCNpilot_expt_1000_bf_scaffold_17513 Species: Altererythrobacter atlanticus (50%)	2	2346 bp	63.17	3.09	93.48

Displaying items 201-250 of 364 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNpilot_P_inoc_Novosphingobium_63_5) and add all its contigs / scaffolds to the organism you choose below

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SCNpilot_P_inoc_Novosphingobium_63_5

SCNPILOT_EXPT_1000_BF_Sphingomonadales_62_4

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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