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SCNPILOT_EXPT_750_P_Alphaproteobacteria_36_9_partial

SCNPILOT_EXPT_1000_BF_Rickettsiales_34_3
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Rickettsiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 51-100 of 144 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_20778
Species: Candidatus Caedibacter acanthamoebae (50%)
2 2033 bp 35.12 2.58 97.69
SCNpilot_expt_1000_bf_scaffold_28624
Species: Candidatus Caedibacter acanthamoebae (75%)
4 1551 bp 31.72 2.58 90.33
SCNpilot_expt_1000_bf_scaffold_40683
Species: Mycobacterium nebraskense (100%)
1 1149 bp 39.08 2.61 99.74
SCNpilot_expt_1000_bf_scaffold_29070
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1532 bp 34.33 2.61 92.62
SCNpilot_expt_1000_bf_scaffold_41071
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1138 bp 35.94 2.64 99.65
SCNpilot_expt_1000_bf_scaffold_18210
Class: Alphaproteobacteria (66.67%)
3 2269 bp 35.17 2.64 83.56
SCNpilot_expt_1000_bf_scaffold_41181
Species: delta proteobacterium MLMS-1 (50%)
2 1135 bp 29.52 2.64 92.25
SCNpilot_expt_1000_bf_scaffold_29141
Domain: Bacteria (66.67%)
3 2747 bp 30.47 2.64 62.69
SCNpilot_expt_1000_bf_scaffold_41264
Species: Pseudomonas alcaligenes (50%)
2 1132 bp 32.51 2.65 81.63
SCNpilot_expt_1000_bf_scaffold_58213
Species: Candidatus Caedibacter acanthamoebae (66.67%)
3 1033 bp 40.56 2.66 56.63
SCNpilot_expt_1000_bf_scaffold_22803
Species: Orientia tsutsugamushi (50%)
2 1879 bp 34.86 2.66 76.96
SCNpilot_expt_1000_bf_scaffold_32285
Species: Candidatus Caedibacter acanthamoebae (100%)
1 1400 bp 38.21 2.68 88.50
SCNpilot_expt_1000_bf_scaffold_35561
Species: Candidatus Caedibacter acanthamoebae (100%)
1 1295 bp 36.53 2.70 87.10
SCNpilot_expt_1000_bf_scaffold_26401
Species: uncultured bacterium (50%)
2 1659 bp 37.79 2.71 99.82
SCNpilot_expt_1000_bf_scaffold_42338 2 1100 bp 39.00 2.73 58.91
SCNpilot_expt_1000_bf_scaffold_39238
Species: Candidatus Caedibacter acanthamoebae (50%)
2 1190 bp 32.18 2.73 67.31
SCNpilot_expt_1000_bf_scaffold_30790
Species: Desulfosporosinus youngiae (50%)
2 1458 bp 34.36 2.74 81.07
SCNpilot_expt_1000_bf_scaffold_33218
Species: Candidatus Caedibacter acanthamoebae (100%)
1 1368 bp 35.96 2.74 95.39
SCNpilot_expt_1000_bf_scaffold_39525
Species: Candidatus Caedibacter acanthamoebae (50%)
2 1181 bp 34.89 2.75 41.91
SCNpilot_expt_1000_bf_scaffold_33531 3 1357 bp 36.92 2.76 77.16
SCNpilot_expt_1000_bf_scaffold_25279
Species: Candidatus Caedibacter acanthamoebae (50%)
2 1720 bp 35.35 2.76 92.79
SCNpilot_expt_1000_bf_scaffold_27130
Species: Candidatus Caedibacter acanthamoebae (75%)
4 1622 bp 36.68 2.77 77.31
SCNpilot_expt_1000_bf_scaffold_31371 3 1436 bp 35.86 2.79 64.55
SCNpilot_expt_1000_bf_scaffold_54338
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1431 bp 37.81 2.80 38.16
SCNpilot_expt_1000_bf_scaffold_40304
Species: uncultured bacterium (100%)
1 1160 bp 27.50 2.80 70.34
SCNpilot_expt_1000_bf_scaffold_43638
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1060 bp 34.62 2.83 75.28
SCNpilot_expt_1000_bf_scaffold_20819
Species: Candidatus Caedibacter acanthamoebae (71.43%)
7 4053 bp 32.10 2.84 79.87
SCNpilot_expt_1000_bf_scaffold_43963
Species: Candidatus Caedibacter acanthamoebae (50%)
2 1051 bp 36.73 2.85 93.91
SCNpilot_expt_1000_bf_scaffold_28260
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1569 bp 38.43 2.87 95.79
SCNpilot_expt_1000_bf_scaffold_38284
Species: Micavibrio aeruginosavorus (100%)
1 1218 bp 38.26 2.87 99.75
SCNpilot_expt_1000_bf_scaffold_18257
Species: Candidatus Caedibacter acanthamoebae (100%)
2 2262 bp 33.11 2.87 96.15
SCNpilot_expt_1000_bf_scaffold_28420
Species: R_Alphaproteobacteria_42_30 (50%)
4 1561 bp 34.66 2.88 74.95
SCNpilot_expt_1000_bf_scaffold_50582
Species: Rivularia sp. PCC 7116 (50%)
2 1460 bp 33.22 2.91 94.11
SCNpilot_expt_1000_bf_scaffold_18663
Species: Candidatus Caedibacter acanthamoebae (50%)
2 2223 bp 32.97 2.92 57.49
SCNpilot_expt_1000_bf_scaffold_23961
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1797 bp 36.23 2.92 94.66
SCNpilot_expt_1000_bf_scaffold_33173
Species: Candidatus Caedibacter acanthamoebae (66.67%)
3 1369 bp 32.43 2.92 70.56
SCNpilot_expt_1000_bf_scaffold_33211
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1368 bp 35.09 2.92 97.59
SCNpilot_expt_1000_bf_scaffold_17974
Phylum: Proteobacteria (66.67%)
3 2296 bp 30.23 2.94 91.72
SCNpilot_expt_1000_bf_scaffold_42682
Species: Phenylobacterium zucineum (100%)
1 1089 bp 36.82 2.98 92.84
SCNpilot_expt_1000_bf_scaffold_34213
Species: Candidatus Caedibacter acanthamoebae (100%)
3 1336 bp 37.50 2.99 92.74
SCNpilot_expt_1000_bf_scaffold_32359
Species: Ruegeria pomeroyi (100%)
1 1397 bp 32.64 3.04 99.86
SCNpilot_expt_1000_bf_scaffold_23852
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1804 bp 34.70 3.05 82.32
SCNpilot_expt_1000_bf_scaffold_41154
Species: Candidatus Caedibacter acanthamoebae (50%)
2 1136 bp 39.79 3.08 99.30
SCNpilot_expt_1000_bf_scaffold_16877
Species: Candidatus Caedibacter acanthamoebae (66.67%)
3 2418 bp 34.78 3.10 99.26
SCNpilot_expt_1000_bf_scaffold_22024
Species: Candidatus Caedibacter acanthamoebae (100%)
1 1933 bp 31.40 3.10 91.41
SCNpilot_expt_1000_bf_scaffold_41408
Species: RIFOXYD2_FULL_RIF_OD1_11_36_9_curated (50%)
2 1128 bp 35.20 3.10 64.63
SCNpilot_expt_1000_bf_scaffold_39105
Species: Candidatus Caedibacter acanthamoebae (50%)
2 1193 bp 32.52 3.14 90.78
SCNpilot_expt_1000_bf_scaffold_36236
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1275 bp 41.57 3.14 93.41
SCNpilot_expt_1000_bf_scaffold_36656
Species: Magnetospira sp. QH-2 (100%)
1 1263 bp 36.98 3.17 96.44
SCNpilot_expt_1000_bf_scaffold_26762
Species: Neisseria macacae (50%)
2 1641 bp 31.57 3.20 77.88
Displaying items 51-100 of 144 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.