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SCNPILOT_EXPT_750_P_Actinomycetales_72_13

SCNPILOT_EXPT_1000_BF_Micrococcales_72_4
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Micrococcales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_1000_bf_UNK

Properties

Avg. coverage: 3.80 Longest contig: 3.35 Kbp Bin length: 175.27 Kbp GC content: 71.91 %
Contigs count: 115 Features count: 266 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 1 / 55 BSCG 1 / 51 ASCG 1 / 38
Displaying items 51-100 of 115 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_31913
Species: RLO_Rokubacteria_71_22 (50%)
2 1414 bp 73.20 3.18 82.11
SCNpilot_expt_1000_bf_scaffold_36177
Species: Cryobacterium roopkundense (50%)
2 1277 bp 72.04 3.52 92.56
SCNpilot_expt_1000_bf_scaffold_45418
Species: Clavibacter michiganensis (50%)
2 1006 bp 75.35 3.73 89.46
SCNpilot_expt_1000_bf_scaffold_39884
Species: Bacillus sp. EGD-AK10 (50%)
2 1171 bp 74.64 4.70 97.61
SCNpilot_expt_1000_bf_scaffold_38743
Species: Cryobacterium sp. MLB-32 (50%)
2 1204 bp 77.57 3.32 92.44
SCNpilot_expt_1000_bf_scaffold_50932
Species: Microbacterium oleivorans (50%)
2 2137 bp 68.51 3.04 50.68
SCNpilot_expt_1000_bf_scaffold_44995
Species: Leifsonia rubra (50%)
2 1019 bp 74.39 5.40 100.69
SCNpilot_expt_1000_bf_scaffold_40259
Species: Cellulomonas fimi (50%)
2 1161 bp 75.88 3.01 85.01
SCNpilot_expt_1000_bf_scaffold_40517
Species: Leifsonia aquatica (50%)
2 1154 bp 75.22 3.03 93.59
SCNpilot_expt_1000_bf_scaffold_38766
Species: Microbacterium ginsengisoli (50%)
2 1203 bp 74.48 3.74 100.25
SCNpilot_expt_1000_bf_scaffold_37682
Species: Clavibacter michiganensis (50%)
2 1234 bp 71.80 4.05 92.87
SCNpilot_expt_1000_bf_scaffold_36988
Species: Eimeria mitis (50%)
2 1254 bp 70.33 3.19 95.45
SCNpilot_expt_1000_bf_scaffold_34426
Species: Microbacterium sp. SA39 (50%)
2 1329 bp 76.67 3.01 92.33
SCNpilot_expt_1000_bf_scaffold_28757
Species: Kyrpidia tusciae (50%)
2 1544 bp 73.77 3.24 98.51
SCNpilot_expt_1000_bf_scaffold_26047
Species: Leifsonia rubra (50%)
2 1677 bp 73.70 3.88 94.10
SCNpilot_expt_1000_bf_scaffold_37185
Species: Methanosarcina barkeri (50%)
2 1248 bp 66.59 2.80 93.27
SCNpilot_expt_1000_bf_scaffold_38019
Species: Leifsonia aquatica (50%)
2 1225 bp 71.02 4.08 100.16
SCNpilot_expt_1000_bf_scaffold_29318
Species: Leucobacter sp. UCD-THU (50%)
2 1520 bp 67.17 3.62 95.13
SCNpilot_expt_1000_bf_scaffold_34957
Species: Microbacterium sp. CH12i (50%)
2 1312 bp 66.46 4.38 100.84
SCNpilot_expt_1000_bf_scaffold_44528
Species: Clavibacter michiganensis (50%)
2 1034 bp 75.24 4.11 100.10
SCNpilot_expt_1000_bf_scaffold_32353
Species: Leifsonia xyli (50%)
2 1397 bp 76.09 4.65 99.43
SCNpilot_expt_1000_bf_scaffold_41153
Species: Desulfotomaculum hydrothermale (50%)
2 1136 bp 71.48 3.08 99.30
SCNpilot_expt_1000_bf_scaffold_26577
Species: Clavibacter michiganensis (50%)
2 1651 bp 74.14 3.33 97.58
SCNpilot_expt_1000_bf_scaffold_56016
Species: Agrococcus pavilionensis (50%)
2 1345 bp 71.08 4.09 50.41
SCNpilot_expt_1000_bf_scaffold_69044
Species: Microbacterium mangrovi (50%)
2 1190 bp 63.28 3.99 83.95
SCNpilot_expt_1000_bf_scaffold_25710
Species: Arthrobacter crystallopoietes (50%)
2 1696 bp 70.70 3.10 91.45
SCNpilot_expt_1000_bf_scaffold_36780
Species: Microbacterium testaceum (50%)
2 1260 bp 74.21 3.57 94.52
SCNpilot_expt_1000_bf_scaffold_29356
Species: Leifsonia aquatica (50%)
2 1518 bp 74.77 3.29 99.80
SCNpilot_expt_1000_bf_scaffold_35532
Species: Microbacterium sp. SA39 (50%)
2 1295 bp 71.43 4.25 99.85
SCNpilot_expt_1000_bf_scaffold_34741
Species: marine actinobacterium PHSC20C1 (100%)
2 1319 bp 72.86 4.36 76.65
SCNpilot_expt_1000_bf_scaffold_35023
Species: Arthrobacter gangotriensis (50%)
2 1310 bp 71.37 3.44 94.35
SCNpilot_expt_1000_bf_scaffold_35536
Species: Arthrobacter sp. FB24 (50%)
2 1295 bp 73.67 4.25 96.60
SCNpilot_expt_1000_bf_scaffold_36037
Species: Bradyrhizobium sp. ORS 375 (50%)
2 1281 bp 69.40 4.49 98.36
SCNpilot_expt_1000_bf_scaffold_39480
Species: Agreia bicolorata (50%)
2 1182 bp 66.50 4.44 99.75
SCNpilot_expt_1000_bf_scaffold_60472
Species: Streptomyces xiamenensis (50%)
2 1305 bp 66.28 4.02 52.87
SCNpilot_expt_1000_bf_scaffold_36570
Species: Microbacterium azadirachtae (50%)
2 1266 bp 74.80 4.94 79.15
SCNpilot_expt_1000_bf_scaffold_43659
Species: Microbacterium sp. SA39 (50%)
2 1490 bp 72.55 4.03 94.63
SCNpilot_expt_1000_bf_scaffold_35820
Species: Leifsonia aquatica (50%)
2 1706 bp 71.45 3.22 96.19
SCNpilot_expt_1000_bf_scaffold_34008
Species: Microbacterium ginsengisoli (50%)
2 1342 bp 71.16 3.73 99.25
SCNpilot_expt_1000_bf_scaffold_37535
Species: Microbacterium sp. UCD-TDU (50%)
2 1237 bp 72.68 5.46 96.04
SCNpilot_expt_1000_bf_scaffold_28093
Species: Microbacterium oleivorans (100%)
2 1879 bp 76.69 4.52 81.27
SCNpilot_expt_1000_bf_scaffold_47645
Species: Pelodictyon phaeoclathratiforme (50%)
2 1732 bp 69.23 4.04 83.83
SCNpilot_expt_1000_bf_scaffold_33998
Species: Clavibacter michiganensis (50%)
2 1342 bp 75.26 2.98 94.34
SCNpilot_expt_1000_bf_scaffold_39294
Species: Microbacterium sp. C448 (100%)
2 1188 bp 72.22 2.95 100.25
SCNpilot_expt_1000_bf_scaffold_54033
Species: Pseudomonas stutzeri (50%)
2 1292 bp 71.44 3.29 97.06
SCNpilot_expt_1000_bf_scaffold_43973
Species: Microbacterium sp. CH12i (50%)
2 1051 bp 71.46 6.18 96.77
SCNpilot_expt_1000_bf_scaffold_73322
Species: Agreia bicolorata (50%)
2 1156 bp 66.09 4.33 70.59
SCNpilot_expt_1000_bf_scaffold_37072
Species: marine actinobacterium PHSC20C1 (50%)
2 1252 bp 75.16 4.19 100.16
SCNpilot_expt_1000_bf_scaffold_50161
Species: Leucobacter sp. UCD-THU (50%)
2 1356 bp 74.78 3.69 98.01
SCNpilot_expt_1000_bf_scaffold_36633
Species: Leifsonia aquatica (50%)
2 1264 bp 75.00 4.15 82.12
Displaying items 51-100 of 115 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.